View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3615_high_1 (Length: 554)
Name: NF3615_high_1
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 171 - 528
Target Start/End: Complemental strand, 37152441 - 37152085
Alignment:
| Q |
171 |
ttataaactgtaagatgcatgatcaataaaaatatgatatttctaaagtaaaaactagtgatatactacaaaaacataagctgatatgatatgtcatata |
270 |
Q |
| |
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|||| |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||| |||||| |
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| T |
37152441 |
ttatgaactttaagatacatgatcaataaaaatatgatatttctaaagtaaaaaccagtgatatagtataaaaacataagccgatatgatatctcatatg |
37152342 |
T |
|
| Q |
271 |
caaacttgaaaacaattcaagattcaagtcataaatcaaaatgacnnnnnnn-gcggttggttacaagtttaagggaacactgtaatttgggtaattcat |
369 |
Q |
| |
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|||| || |||||||||| ||||| |||||||||||||||||||| | |||||| |||||||| ||||||| |||| ||||| | ||||| | |
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| T |
37152341 |
caaatttcaaaacaattccagattgaagtcataaatcaaaatgacaaataaaagtggttggctacaagttgaagggaatgctgtgatttgtgcaattcct |
37152242 |
T |
|
| Q |
370 |
cagaatgagttgagatttctgttgcaattcatgtccagaaaataaatccatgacaactcttattggtcgagtttagtttagtgtcaactcaagctagact |
469 |
Q |
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| T |
37152241 |
caaaatgaattgagatttctgttgcaattcatgtccag-aaataaatgcatgacaactcttactggtcgagttaagtttagtttcaaatcaagctagact |
37152143 |
T |
|
| Q |
470 |
tgcttgtaatacaaatactgataaccaacgtttttattttaatgcagtggtggacaatg |
528 |
Q |
| |
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|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
37152142 |
ggcttgt-atacaaatactgataatcatcgtttttattttaatgcagtggtggacaatg |
37152085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 181 - 389
Target Start/End: Complemental strand, 37145251 - 37145044
Alignment:
| Q |
181 |
taagatgcatgatcaataaaaatatgatatttctaaagtaaaaactagtgatatactacaaaaacataagctgatatgatatgtcatatacaaacttgaa |
280 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
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| T |
37145251 |
taagatacatgatcaataaaaatatgatatttctaatgtaaaaaccagtgatatactataaaaacataagctgatatgatatgtcatatac-aacttcaa |
37145153 |
T |
|
| Q |
281 |
aacaattcaagattcaagtcataaatcaaaatgacnnnnnnngcggttggttacaagtttaagggaacactgtaatttgggtaattcatcagaatgagtt |
380 |
Q |
| |
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|| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||| | | ||||| | ||||||||| ||||| || |
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| T |
37145152 |
ggcagttcaagattcaagtcataaatcaaaatgacaaaaagagtggttggctacaagtttaagggaatgttctgatttgtgcaattcatcaaaatgaatt |
37145053 |
T |
|
| Q |
381 |
gagatttct |
389 |
Q |
| |
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||||||||| |
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| T |
37145052 |
gagatttct |
37145044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 48433201 - 48433254
Alignment:
| Q |
257 |
tgatatgtcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaa |
310 |
Q |
| |
|
|||||| |||||||| ||| | |||| |||||||||||||||||| |||||||| |
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|
| T |
48433201 |
tgatatatcatatacgaacctcaaaagaattcaagattcaagtcaaaaatcaaa |
48433254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 48433357 - 48433409
Alignment:
| Q |
258 |
gatatgtcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaa |
310 |
Q |
| |
|
||||| |||||||| ||| | |||| |||||||||||||||||| |||||||| |
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|
| T |
48433357 |
gatatatcatatacgaacctcaaaagaattcaagattcaagtcaaaaatcaaa |
48433409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 16945094 - 16944906
Alignment:
| Q |
16 |
gttttgtttctttatttaaagttttgcagaagaaacaatggaaacaatgtaatattttgcattttgtaagtaaattctttcaattaaggttattgaatct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16945094 |
gttttgtttctttatttaaagttttgcagaagaaactatgaaaacaatgtaatattttgcattttgtaagtaaattctttcaattaaggttattgaatct |
16944995 |
T |
|
| Q |
116 |
aagattcaaattgtgaatcggaaaatttatttttcaaaaaataaattgaatcttattataaactgtaagatgcatgatcaataaaaata |
204 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16944994 |
aagattcaaattgtgaattggaaaatttatttttcaaaaaataaattgaatcttattataaactgtaagatgcatgatcaataaaaata |
16944906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 17015759 - 17015571
Alignment:
| Q |
16 |
gttttgtttctttatttaaagttttgcagaagaaacaatggaaacaatgtaatattttgcattttgtaagtaaattctttcaattaaggttattgaatct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17015759 |
gttttgtttctttatttaaagttttgcagaagaaactatgaaaacaatgtaatattttgcattttgtaagtaaattctttcaattaaggttattgaatct |
17015660 |
T |
|
| Q |
116 |
aagattcaaattgtgaatcggaaaatttatttttcaaaaaataaattgaatcttattataaactgtaagatgcatgatcaataaaaata |
204 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17015659 |
aagattcaaattgtgaattggaaaatttatttttcaaaaaataaattgaatcttattataaactgtaagatgcatgatcaataaaaata |
17015571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 16165971 - 16166021
Alignment:
| Q |
264 |
tcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaaatga |
314 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| |||||||||||||||| |
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| T |
16165971 |
tcatatacaaacttcaaaataattcaagattcatatcataaatcaaaatga |
16166021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 44011657 - 44011607
Alignment:
| Q |
264 |
tcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaaatga |
314 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| |||||||||||||||| |
|
|
| T |
44011657 |
tcatatacaaacttcaaaataattcaagattcatatcataaatcaaaatga |
44011607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 15043673 - 15043731
Alignment:
| Q |
257 |
tgatatgtcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaaatgac |
315 |
Q |
| |
|
|||||| || ||| ||||||| |||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
15043673 |
tgatatatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgac |
15043731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 45464350 - 45464249
Alignment:
| Q |
192 |
atcaataaaaatatgatatttctaaagtaaaaactagtgatatactacaaaaacataagctgatatgatatgtcatatacaaacttgaaaacaattcaag |
291 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| |||| |||| |||||| ||||||| ||| |||| |||||||||||| | |||| |||| ||| |
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|
| T |
45464350 |
atcaataaaaatatgatattt-ttaagtaaaaacaagtg--atacagcaaaaatataagctaata-catatatcatatacaaacctcaaaataattgaag |
45464255 |
T |
|
| Q |
292 |
attcaa |
297 |
Q |
| |
|
|||||| |
|
|
| T |
45464254 |
attcaa |
45464249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15003939 - 15003983
Alignment:
| Q |
271 |
caaacttgaaaacaattcaagattcaagtcataaatcaaaatgac |
315 |
Q |
| |
|
||||||| |||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
15003939 |
caaacttcaaaataattcacgattcaagtcatcaatcaaaatgac |
15003983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15018442 - 15018486
Alignment:
| Q |
271 |
caaacttgaaaacaattcaagattcaagtcataaatcaaaatgac |
315 |
Q |
| |
|
||||||| |||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
15018442 |
caaacttcaaaataattcacgattcaagtcatcaatcaaaatgac |
15018486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15025560 - 15025604
Alignment:
| Q |
271 |
caaacttgaaaacaattcaagattcaagtcataaatcaaaatgac |
315 |
Q |
| |
|
||||||| |||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
15025560 |
caaacttcaaaataattcacgattcaagtcatcaatcaaaatgac |
15025604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 7930719 - 7930683
Alignment:
| Q |
279 |
aaaacaattcaagattcaagtcataaatcaaaatgac |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
7930719 |
aaaataattcaagattcaagtcataaattaaaatgac |
7930683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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