View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3615_high_11 (Length: 325)

Name: NF3615_high_11
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3615_high_11
NF3615_high_11
[»] chr6 (1 HSPs)
chr6 (24-320)||(13410115-13410411)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 24 - 320
Target Start/End: Original strand, 13410115 - 13410411
Alignment:
Q  24 gcggttccttctggaacaccgcagcggccggttcaaggaacctctgacatgatcagagactatttggaatattctcatattcttcaaagctctggtgatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13410115 gcggttccttctggaacaccgcagcggccggttcaaggaacctctgacatgatcagagactatttggaatattctcatattcttcaaagctctggtgatt 13410214  T
Q  124 ttcaactacaacaaatgcagcagcaacaacaattacaagcttctaatttggttcaacaatggtattataattcacaaatggctgcactacaatcacattc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13410215 ttcaactacaacaaatgcagcagcaacaacaattacaagcttctaatttggttcaacaatggtattataattcacaaatggctgcactacaatcacattc 13410314  T
Q  224 attgttatcatcttcatcactttctatgaattctaatatgttaccatcaactccttcattttcaccttccactcaactttcatcctcctatgcttct 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13410315 attgttatcatcttcatcactttctatgaattctaatatgttaccatcaactccttcattttcaccttccactcaactttcatcctcctctgcttct 13410411  T

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