View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3615_high_19 (Length: 252)
Name: NF3615_high_19
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_high_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 25070458 - 25070211
Alignment:
| Q |
4 |
atgtcgaagaatatatggcagtcttcaatcatacatgttcaatagtagaggggtggacaaaactttatcatggtttttcagcatgtgggtaatgaaagtt |
103 |
Q |
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| T |
25070458 |
atgtcaaagaaaatatggcagtcttcaatcatacatgttcaatagtagaggggtgggcaaaactttatcatggtttttcagcatgtgggtaatgaaagtt |
25070359 |
T |
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| Q |
104 |
gattttgtgttgtgatttaattgagccaattgttgggtctttgatactatatgttcattaatcataaatggatgatttttggcttattcaaag-nnnnnn |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25070358 |
gattttgtgttgtgatttaattgagccaattgttgggtctttgatactatatgttcattaatcataaattgatgatttttggcttattcaaagaaaaaaa |
25070259 |
T |
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| Q |
203 |
nntggtgattataacttgatctcatgttttttcaccatgagagtagtgaa |
252 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25070258 |
aatggtgattataacttga--tcatgttttttcaccatgagagtagtgaa |
25070211 |
T |
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