View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3615_high_22 (Length: 249)
Name: NF3615_high_22
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_high_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 28471488 - 28471724
Alignment:
| Q |
13 |
aatattaacataaactaaattcttcttacttgaagaaacatccttaaacttaggcaaataagtggttttttcctggtatggtgtttccttcgctagcggc |
112 |
Q |
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| T |
28471488 |
aatattaacataaactaaattcttcttacttgaagaaacatccttaaacttaggcaaataagtggttttttcctggtatggtgtttccttcgctagcggc |
28471587 |
T |
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| Q |
113 |
ggctctattagattcatgaattgcttagcaaagttaacacttttacaatcttctggaagaacttgatgatagaacaaagagcttctgttttcactttcag |
212 |
Q |
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| T |
28471588 |
ggctctattagattcatgaattgcttagcaaagttaacacttttacaatcttctggaagaacttgatgatagaacaaagagcttctgttttcactttcag |
28471687 |
T |
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| Q |
213 |
tttcagattttgattctgattttttcttgaaaacaac |
249 |
Q |
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| T |
28471688 |
tttcagattttgattctgattttttcttgaaaacaac |
28471724 |
T |
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