View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3615_high_5 (Length: 442)
Name: NF3615_high_5
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 16495256 - 16495679
Alignment:
| Q |
1 |
tgcattggtttaaataagtaacagtcaatcacatcaaattagtttaacacattacttataagctagatcatgctgcaatgctaacacactcaacaaagca |
100 |
Q |
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| T |
16495256 |
tgcattggtttaaataagtaacagtcaatcacatcaaattagtttaacacattacttataagctagatcatgctgcaatgctaacacactcaacaaagca |
16495355 |
T |
|
| Q |
101 |
atgtgaatctagttatgaacacacaccagatgcataataacataaacatactcaacaatgtgaagtaggcatggattccacttagcatagattaaggaga |
200 |
Q |
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| T |
16495356 |
atgtgaatctagttatgaacacacaccagatgcataataacataaacatactcaacaatgtgaagtaggcatggattccacttagcatagattaaggaga |
16495455 |
T |
|
| Q |
201 |
taacgtcaaattctaccacttctaaaattatatataaatcaaaattctaagatgaattttattgatatcaaaaggaagaaaatcgacctgacaaatgaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16495456 |
caacgtcaaattctaccacttctaaaattatatataaatcaaaattctaagatgaattttattgatatcaaaaggaagaaaatcgacctaacaaatgaag |
16495555 |
T |
|
| Q |
301 |
aatgacaaacctaacaatccaagaatctagagtgtttatgattcataaacataaactggttcgaaaccaatttaataaaagagagggtgatagatggtgg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16495556 |
aatgacaaacctaacaatccaagaatctagagtgtttatgattcataaacataaactggttcgaaaccaatttaataaaagagagggtgataggtggtgg |
16495655 |
T |
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| Q |
401 |
ttaagtggccgccggtggtggtcc |
424 |
Q |
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| T |
16495656 |
ttaagtggccgccggtggtggtcc |
16495679 |
T |
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