View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3615_high_6 (Length: 404)

Name: NF3615_high_6
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3615_high_6
NF3615_high_6
[»] chr6 (20 HSPs)
chr6 (16-387)||(27703103-27703480)
chr6 (10-160)||(26852469-26852619)
chr6 (70-332)||(26059489-26059782)
chr6 (70-332)||(26079459-26079752)
chr6 (312-394)||(27682501-27682583)
chr6 (70-268)||(25486923-25487133)
chr6 (332-394)||(27715092-27715154)
chr6 (80-152)||(27079154-27079226)
chr6 (202-268)||(26146521-26146587)
chr6 (212-268)||(25583207-25583263)
chr6 (61-156)||(27661809-27661904)
chr6 (296-380)||(27078974-27079057)
chr6 (156-249)||(26852366-26852449)
chr6 (129-197)||(25986776-25986842)
chr6 (202-243)||(27423938-27423979)
chr6 (292-331)||(26852258-26852297)
chr6 (118-156)||(25514498-25514536)
chr6 (118-156)||(26146658-26146696)
chr6 (156-197)||(27079085-27079126)
chr6 (221-261)||(27662009-27662049)
[»] chr8 (1 HSPs)
chr8 (300-394)||(29270364-29270458)
[»] scaffold0349 (1 HSPs)
scaffold0349 (332-394)||(16790-16852)
[»] scaffold0003 (1 HSPs)
scaffold0003 (202-243)||(63384-63425)
[»] chr1 (1 HSPs)
chr1 (68-129)||(26140142-26140203)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 27703103 - 27703480
Alignment:
Q  16 caaatgtaaattgaaacaatattttaagattgcacaaacatcatccacaaaatattacatcatgtctcatcatttgaaaaacttctccaactagaaacaa 115  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||| |||||||||||| |||||||||||||||||||||    
T  27703103 caaatgtaaatagaaacaatattttaagattgcacaaacataatccagaaaatcttaaatcatgtatcatcatttgaataacttctccaactagaaacaa 27703202  T
Q  116 caaatttttaattgactatatacagaaattaatcaacatttgtaaacagcaaaccacaaacctccattgttgagattgagagttggctttatgatggacc 215  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||  |||||||||||| |    
T  27703203 cgaatttgtaattgactatatacagaaattaatcaacatttgtaaacagaaaatcacaaacctccaatgttgagattgagagttaactttatgatggagc 27703302  T
Q  216 tagaccaaggaatgtacccaacatctttctttcatcttgtgcactgctgaataccacattctcatc------agtgttgctttttgatgcacctagacta 309  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| || | || |   || |||||||       |||||||||||||||||||||||||||    
T  27703303 tagaccaaggaatgtaccccacatcattctttcatcttgtgcattgtttaaaatttcaatctcatccccatgcgtgttgctttttgatgcacctagacta 27703402  T
Q  310 aggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctct 387  Q
    ||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  27703403 aggaatgtaccccatgtctttttttgttcctctttctttaaatcctgttgttgcaatgaagcattgatatcctcctct 27703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 26852619 - 26852469
Alignment:
Q  10 catcatcaaatgtaaattgaaacaatattttaagattgcacaaacatcatccacaaaatattacatcatgtctcatcatttgaaaaacttctccaactag 109  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  26852619 catcctcaaatgtaaattgaaacaatattttaagagtgcacaaacatcatcaacaaaatctcacatcatgtctcatcatttgaaaaacttctccaactag 26852520  T
Q  110 aaacaacaaatttttaattgactatatacagaaattaatcaacatttgtaa 160  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  26852519 aaacaacgaatttgcaattgactatatacagaaattaatcaacatttgtaa 26852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 332
Target Start/End: Complemental strand, 26059782 - 26059489
Alignment:
Q  70 ttacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgta---------a 160  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||   ||||| ||| |||||| |||||||||||||||||||||| ||         |    
T  26059782 ttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtataa 26059683  T
Q  161 acagcaaaccacaaacctccattgttgagattgagag----------------ttggctttatgatggacctagaccaaggaatgtacccaacatctttc 244  Q
    ||| |||| ||||||||| || |||||||||||||||                ||  |||||||||||||||| ||| |||||||||||| |||||||||    
T  26059682 acatcaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatctttc 26059583  T
Q  245 tttcatcttgtgcactgctgaat------accacattctcatcagtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 332  Q
    ||||||||||||||||||| |||      | | ||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26059582 tttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26059489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 332
Target Start/End: Complemental strand, 26079752 - 26079459
Alignment:
Q  70 ttacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgta---------a 160  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||   ||||| ||| |||||| |||||||||||||||||||||| ||         |    
T  26079752 ttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtataa 26079653  T
Q  161 acagcaaaccacaaacctccattgttgagattgagag----------------ttggctttatgatggacctagaccaaggaatgtacccaacatctttc 244  Q
    ||| |||| ||||||||| || |||||||||||||||                ||  |||||||||||||||| ||| |||||||||||| |||||||||    
T  26079652 acatcaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatctttc 26079553  T
Q  245 tttcatcttgtgcactgctgaat------accacattctcatcagtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 332  Q
    ||||||||||||||||||| |||      | | ||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26079552 tttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26079459  T

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Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 312 - 394
Target Start/End: Complemental strand, 27682583 - 27682501
Alignment:
Q  312 gaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 394  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  27682583 gaatgtaccccatgtctttctttgttcctctttcatcaattcctgttgttgcaatgaagcattgatatcctcctctgtctctg 27682501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 25487133 - 25486923
Alignment:
Q  70 ttacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacatttgtaaacagcaaac 169  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||   ||||| ||| ||||||||||||||||||  ||||||||| ||  || ||||     
T  25487133 ttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactatatacagaaatt--tcaacatttata--caacaaag 25487038  T
Q  170 cacaaacctccattgttgagattgagag----------------ttggctttatgatggacctagaccaaggaatgtacccaacatctttctttcatctt 253  Q
    ||||||||| || |||||||||||||||                ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25487037 cacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctagactaaggaatgtacccaacatctttctttcatctt 25486938  T
Q  254 gtgcactgctgaata 268  Q
    | |||||||| ||||    
T  25486937 gcgcactgcttaata 25486923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 332 - 394
Target Start/End: Original strand, 27715092 - 27715154
Alignment:
Q  332 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 394  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27715092 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctg 27715154  T

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Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 27079226 - 27079154
Alignment:
Q  80 tctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaac 152  Q
    ||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  27079226 tctcatcatttaaaaaacttgtccaactagaaacaacaaatttgtaattgaatatatacagaaattaatcaac 27079154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 26146587 - 26146521
Alignment:
Q  202 ctttatgatggacctagaccaaggaatgtacccaacatctttctttcatcttgtgcactgctgaata 268  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  26146587 ctttatgatggacctagactaaggaatgtacccaacatctttctttcatcttgcgcactgcttaata 26146521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 25583263 - 25583207
Alignment:
Q  212 gacctagaccaaggaatgtacccaacatctttctttcatcttgtgcactgctgaata 268  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25583263 gacctaaaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaata 25583207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 27661809 - 27661904
Alignment:
Q  61 cacaaaatattacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattgactatatacagaaattaatcaacattt 156  Q
    |||| ||| |||||||||||||||| |||| |  |||||||||| ||| ||||||  ||||| |||||||||||||||||||||||||||| ||||    
T  27661809 cacataatcttacatcatgtctcatgatttaagcaacttctccatctataaacaatgaatttgtaattgactatatacagaaattaatcaatattt 27661904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 380
Target Start/End: Complemental strand, 27079057 - 27078974
Alignment:
Q  296 atgcacctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatc 380  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||  |||| |||| ||||||||| ||||| ||||||||    
T  27079057 atgcacctagacaaaggaatgtaccccatgtctttctttcttccacttttatcaattccttttgttgcaacgaagc-ttgatatc 27078974  T

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Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 26852449 - 26852366
Alignment:
Q  156 tgtaaacagcaaaccacaaacctccattgttgagattgagagttggctttatgatggacctagaccaaggaatgtacccaacatctttctttca 249  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||||||          ||||||||||||||||| ||||||||||||||    
T  26852449 tgtaaacagcaaaccacaaacctccaatgttgagattgagagttaactttat----------gaccaaggaatgtaccctacatctttctttca 26852366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 25986842 - 25986776
Alignment:
Q  129 gactatatacagaaattaatcaacatttgtaaacagcaaaccacaaacctccattgttgagattgagag 197  Q
    |||||||||||||||||||||||||||  || ||| |||| ||||||||| || |||||||||||||||    
T  25986842 gactatatacagaaattaatcaacatt--tatacaacaaagcacaaacctgcaatgttgagattgagag 25986776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 27423938 - 27423979
Alignment:
Q  202 ctttatgatggacctagaccaaggaatgtacccaacatcttt 243  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  27423938 ctttatgatgaacctagaccaaggaatgtacccaacatcttt 27423979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 331
Target Start/End: Complemental strand, 26852297 - 26852258
Alignment:
Q  292 tttgatgcacctagactaaggaatgtaccccatgtctttc 331  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26852297 tttgatgcacctagactaaggaatgtaccccaagtctttc 26852258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 25514536 - 25514498
Alignment:
Q  118 aatttttaattgactatatacagaaattaatcaacattt 156  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  25514536 aatttgtaactgactatatacagaaattaatcaacattt 25514498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 26146696 - 26146658
Alignment:
Q  118 aatttttaattgactatatacagaaattaatcaacattt 156  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  26146696 aatttgtaactgactatatacagaaattaatcaacattt 26146658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 27079126 - 27079085
Alignment:
Q  156 tgtaaacagcaaaccacaaacctccattgttgagattgagag 197  Q
    ||||||||||||| ||||||||| || |||||||||||||||    
T  27079126 tgtaaacagcaaagcacaaaccttcaatgttgagattgagag 27079085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 27662009 - 27662049
Alignment:
Q  221 caaggaatgtacccaacatctttctttcatcttgtgcactg 261  Q
    |||||||||||||| |||| ||||||||||||||| |||||    
T  27662009 caaggaatgtaccccacatatttctttcatcttgtccactg 27662049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 29270364 - 29270458
Alignment:
Q  300 acctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 394  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270364 acctagactaaggtatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 29270458  T

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Target: scaffold0349 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 332 - 394
Target Start/End: Complemental strand, 16852 - 16790
Alignment:
Q  332 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 394  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16852 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctg 16790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 63425 - 63384
Alignment:
Q  202 ctttatgatggacctagaccaaggaatgtacccaacatcttt 243  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  63425 ctttatgatgaacctagaccaaggaatgtacccaacatcttt 63384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 26140203 - 26140142
Alignment:
Q  68 tattacatcatgtctcatcatttgaaaaacttctccaactagaaacaacaaatttttaattg 129  Q
    |||||||||| |||||||||||| ||||||||||| | ||||||| ||  ||||| ||||||    
T  26140203 tattacatcaggtctcatcatttcaaaaacttctctagctagaaataatgaatttgtaattg 26140142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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