View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3615_low_1 (Length: 554)

Name: NF3615_low_1
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3615_low_1
NF3615_low_1
[»] chr7 (4 HSPs)
chr7 (171-528)||(37152085-37152441)
chr7 (181-389)||(37145044-37145251)
chr7 (257-310)||(48433201-48433254)
chr7 (258-310)||(48433357-48433409)
[»] chr2 (2 HSPs)
chr2 (16-204)||(16944906-16945094)
chr2 (16-204)||(17015571-17015759)
[»] chr8 (1 HSPs)
chr8 (264-314)||(16165971-16166021)
[»] chr3 (1 HSPs)
chr3 (264-314)||(44011607-44011657)
[»] chr1 (5 HSPs)
chr1 (257-315)||(15043673-15043731)
chr1 (192-297)||(45464249-45464350)
chr1 (271-315)||(15003939-15003983)
chr1 (271-315)||(15018442-15018486)
chr1 (271-315)||(15025560-15025604)
[»] chr4 (1 HSPs)
chr4 (279-315)||(7930683-7930719)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 171 - 528
Target Start/End: Complemental strand, 37152441 - 37152085
Alignment:
Q  171 ttataaactgtaagatgcatgatcaataaaaatatgatatttctaaagtaaaaactagtgatatactacaaaaacataagctgatatgatatgtcatata 270  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||| ||||||     
T  37152441 ttatgaactttaagatacatgatcaataaaaatatgatatttctaaagtaaaaaccagtgatatagtataaaaacataagccgatatgatatctcatatg 37152342  T
Q  271 caaacttgaaaacaattcaagattcaagtcataaatcaaaatgacnnnnnnn-gcggttggttacaagtttaagggaacactgtaatttgggtaattcat 369  Q
    |||| || |||||||||| ||||| ||||||||||||||||||||        | |||||| |||||||| |||||||  |||| ||||| | ||||| |    
T  37152341 caaatttcaaaacaattccagattgaagtcataaatcaaaatgacaaataaaagtggttggctacaagttgaagggaatgctgtgatttgtgcaattcct 37152242  T
Q  370 cagaatgagttgagatttctgttgcaattcatgtccagaaaataaatccatgacaactcttattggtcgagtttagtttagtgtcaactcaagctagact 469  Q
    || ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||| |||| ||||||||||||    
T  37152241 caaaatgaattgagatttctgttgcaattcatgtccag-aaataaatgcatgacaactcttactggtcgagttaagtttagtttcaaatcaagctagact 37152143  T
Q  470 tgcttgtaatacaaatactgataaccaacgtttttattttaatgcagtggtggacaatg 528  Q
     |||||| |||||||||||||||| || |||||||||||||||||||||||||||||||    
T  37152142 ggcttgt-atacaaatactgataatcatcgtttttattttaatgcagtggtggacaatg 37152085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 181 - 389
Target Start/End: Complemental strand, 37145251 - 37145044
Alignment:
Q  181 taagatgcatgatcaataaaaatatgatatttctaaagtaaaaactagtgatatactacaaaaacataagctgatatgatatgtcatatacaaacttgaa 280  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||    
T  37145251 taagatacatgatcaataaaaatatgatatttctaatgtaaaaaccagtgatatactataaaaacataagctgatatgatatgtcatatac-aacttcaa 37145153  T
Q  281 aacaattcaagattcaagtcataaatcaaaatgacnnnnnnngcggttggttacaagtttaagggaacactgtaatttgggtaattcatcagaatgagtt 380  Q
      || ||||||||||||||||||||||||||||||       | |||||| ||||||||||||||||   | | ||||| | ||||||||| ||||| ||    
T  37145152 ggcagttcaagattcaagtcataaatcaaaatgacaaaaagagtggttggctacaagtttaagggaatgttctgatttgtgcaattcatcaaaatgaatt 37145053  T
Q  381 gagatttct 389  Q
    |||||||||    
T  37145052 gagatttct 37145044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 48433201 - 48433254
Alignment:
Q  257 tgatatgtcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaa 310  Q
    |||||| |||||||| ||| | |||| |||||||||||||||||| ||||||||    
T  48433201 tgatatatcatatacgaacctcaaaagaattcaagattcaagtcaaaaatcaaa 48433254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 48433357 - 48433409
Alignment:
Q  258 gatatgtcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaa 310  Q
    ||||| |||||||| ||| | |||| |||||||||||||||||| ||||||||    
T  48433357 gatatatcatatacgaacctcaaaagaattcaagattcaagtcaaaaatcaaa 48433409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 16945094 - 16944906
Alignment:
Q  16 gttttgtttctttatttaaagttttgcagaagaaacaatggaaacaatgtaatattttgcattttgtaagtaaattctttcaattaaggttattgaatct 115  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16945094 gttttgtttctttatttaaagttttgcagaagaaactatgaaaacaatgtaatattttgcattttgtaagtaaattctttcaattaaggttattgaatct 16944995  T
Q  116 aagattcaaattgtgaatcggaaaatttatttttcaaaaaataaattgaatcttattataaactgtaagatgcatgatcaataaaaata 204  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16944994 aagattcaaattgtgaattggaaaatttatttttcaaaaaataaattgaatcttattataaactgtaagatgcatgatcaataaaaata 16944906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 17015759 - 17015571
Alignment:
Q  16 gttttgtttctttatttaaagttttgcagaagaaacaatggaaacaatgtaatattttgcattttgtaagtaaattctttcaattaaggttattgaatct 115  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17015759 gttttgtttctttatttaaagttttgcagaagaaactatgaaaacaatgtaatattttgcattttgtaagtaaattctttcaattaaggttattgaatct 17015660  T
Q  116 aagattcaaattgtgaatcggaaaatttatttttcaaaaaataaattgaatcttattataaactgtaagatgcatgatcaataaaaata 204  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17015659 aagattcaaattgtgaattggaaaatttatttttcaaaaaataaattgaatcttattataaactgtaagatgcatgatcaataaaaata 17015571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 16165971 - 16166021
Alignment:
Q  264 tcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaaatga 314  Q
    |||||||||||||| |||| |||||||||||||  ||||||||||||||||    
T  16165971 tcatatacaaacttcaaaataattcaagattcatatcataaatcaaaatga 16166021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 44011657 - 44011607
Alignment:
Q  264 tcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaaatga 314  Q
    |||||||||||||| |||| |||||||||||||  ||||||||||||||||    
T  44011657 tcatatacaaacttcaaaataattcaagattcatatcataaatcaaaatga 44011607  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 15043673 - 15043731
Alignment:
Q  257 tgatatgtcatatacaaacttgaaaacaattcaagattcaagtcataaatcaaaatgac 315  Q
    |||||| || ||| ||||||| |||| |||||| |||||||||||| ||||||||||||    
T  15043673 tgatatatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgac 15043731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 45464350 - 45464249
Alignment:
Q  192 atcaataaaaatatgatatttctaaagtaaaaactagtgatatactacaaaaacataagctgatatgatatgtcatatacaaacttgaaaacaattcaag 291  Q
    ||||||||||||||||||||| | |||||||||| ||||  ||||  |||||| ||||||| |||  |||| |||||||||||| | |||| |||| |||    
T  45464350 atcaataaaaatatgatattt-ttaagtaaaaacaagtg--atacagcaaaaatataagctaata-catatatcatatacaaacctcaaaataattgaag 45464255  T
Q  292 attcaa 297  Q
    ||||||    
T  45464254 attcaa 45464249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15003939 - 15003983
Alignment:
Q  271 caaacttgaaaacaattcaagattcaagtcataaatcaaaatgac 315  Q
    ||||||| |||| |||||| |||||||||||| ||||||||||||    
T  15003939 caaacttcaaaataattcacgattcaagtcatcaatcaaaatgac 15003983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15018442 - 15018486
Alignment:
Q  271 caaacttgaaaacaattcaagattcaagtcataaatcaaaatgac 315  Q
    ||||||| |||| |||||| |||||||||||| ||||||||||||    
T  15018442 caaacttcaaaataattcacgattcaagtcatcaatcaaaatgac 15018486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15025560 - 15025604
Alignment:
Q  271 caaacttgaaaacaattcaagattcaagtcataaatcaaaatgac 315  Q
    ||||||| |||| |||||| |||||||||||| ||||||||||||    
T  15025560 caaacttcaaaataattcacgattcaagtcatcaatcaaaatgac 15025604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 7930719 - 7930683
Alignment:
Q  279 aaaacaattcaagattcaagtcataaatcaaaatgac 315  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  7930719 aaaataattcaagattcaagtcataaattaaaatgac 7930683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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