View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3615_low_12 (Length: 350)
Name: NF3615_low_12
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 55298084 - 55298402
Alignment:
| Q |
18 |
gtaatctaatctaatctaactatattttgtaaaataaagtaaaatgtggactatcatgtcaatttgggtcaaaatagggtttactccattgttgtgacaa |
117 |
Q |
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| T |
55298084 |
gtaatctaatctaatctaactatattttgtaaaataaagtaaaatgtggactatcatgtcaatttgggtcaaaatagggtttactccattgttgtgacaa |
55298183 |
T |
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| Q |
118 |
catatgctcttgtcatagatttggaatggaagctcatctatgttggatctgctgaggatgagacttatgaccagttattggagagtgtccttgttggtcc |
217 |
Q |
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| T |
55298184 |
catatgctcttgtcatagatttggaatggaagctcatctatgttggatctgctgaggatgagacttatgaccagttattggagagtgtccttgttggtcc |
55298283 |
T |
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| Q |
218 |
tgtcaatgttggaaactatcgctttgttttacaggcaatcatctcctttatcaattctgttgccacttcttataaataaatatatataatattcaacctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55298284 |
tgtcaatgttggaaactatcgctttgttttacaggcaatcatctcctttatcaattctgttgccacttcttataaataaatatatataatattcaacctt |
55298383 |
T |
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| Q |
318 |
atcaattctcttctctttt |
336 |
Q |
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| T |
55298384 |
aacaattctcttctctttt |
55298402 |
T |
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