View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3615_low_15 (Length: 301)

Name: NF3615_low_15
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3615_low_15
NF3615_low_15
[»] chr1 (3 HSPs)
chr1 (49-287)||(49420749-49420987)
chr1 (154-287)||(42645939-42646070)
chr1 (232-264)||(3789315-3789347)
[»] chr4 (3 HSPs)
chr4 (142-287)||(51412610-51412757)
chr4 (206-287)||(33463693-33463774)
chr4 (206-285)||(48569424-48569503)
[»] chr8 (2 HSPs)
chr8 (55-294)||(35839731-35839978)
chr8 (154-287)||(33688239-33688369)
[»] chr6 (2 HSPs)
chr6 (154-287)||(1770683-1770816)
chr6 (252-290)||(26299684-26299722)
[»] chr2 (5 HSPs)
chr2 (140-294)||(8145553-8145705)
chr2 (206-279)||(30544751-30544824)
chr2 (206-287)||(44154933-44155014)
chr2 (233-287)||(8146633-8146687)
chr2 (232-264)||(26021047-26021079)
[»] chr7 (3 HSPs)
chr7 (206-287)||(9046-9127)
chr7 (154-287)||(47800078-47800211)
chr7 (254-290)||(41531618-41531654)
[»] chr5 (2 HSPs)
chr5 (140-287)||(6007539-6007686)
chr5 (227-294)||(35263281-35263348)
[»] chr3 (3 HSPs)
chr3 (206-286)||(54901366-54901446)
chr3 (205-285)||(33862141-33862221)
chr3 (232-264)||(50305659-50305691)
[»] scaffold0181 (1 HSPs)
scaffold0181 (205-264)||(15117-15176)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 49 - 287
Target Start/End: Original strand, 49420749 - 49420987
Alignment:
Q  49 ggctcatgattcaacagtgtgtgtttgttcagttcctcaaaagttctttgttgaaacttgaatgaaatggatttgtttagagaagagttgctggtgagag 148  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49420749 ggctcatgattcaacgatgtgtgtttgttcagttcctcaaaagttctttgttgaaacttgaatgaaatggatttgtttagagaagagttgctggtgagag 49420848  T
Q  149 agccatggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatggcta 248  Q
    |||||||||||| ||||||||||||||||||||||||||       |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  49420849 agccatggaggacatagaattgttggagaagatagtgtgaaaaaaattcagtgtggagagaacatgataagagggtgctccttatttaatcaaatggcta 49420948  T
Q  249 aaatcaactttcctatcatggaaaacaactttcctttcc 287  Q
    ||||||||||| | ||||||| ||||||||| |||||||    
T  49420949 aaatcaacttttccatcatgggaaacaacttccctttcc 49420987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 42645939 - 42646070
Alignment:
Q  154 tggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatggctaaaatc 253  Q
    ||||||||| ||||||||||| ||||||||||||       |||| |||  ||||||||||||| ||| || ||| |||||||||||||||||||| |||    
T  42645939 tggaggagagagaattgttggggaagatagtgtgaaaaa--ttcagtgttgagagaacatgataagagtgtactctttatttaatcaaatggctaagatc 42646036  T
Q  254 aactttcctatcatggaaaacaactttcctttcc 287  Q
    |||||||| || ||||||||| |||| |||||||    
T  42646037 aactttcccattatggaaaactacttccctttcc 42646070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 3789315 - 3789347
Alignment:
Q  232 atttaatcaaatggctaaaatcaactttcctat 264  Q
    |||||||| ||||||||||||||||||||||||    
T  3789315 atttaatctaatggctaaaatcaactttcctat 3789347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 51412757 - 51412610
Alignment:
Q  142 gtgagagagccatggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaa 241  Q
    ||||||||| |||||| ||||||||| |||||| ||||||||||||       |||| |||  ||||||||||||| ||| |||||||||||||||||||    
T  51412757 gtgagagagacatggaagagatagaactgttggggaagatagtgtgaaaaaaattcagtgttgagagaacatgataagagtgtgctccttatttaatcaa 51412658  T
Q  242 atggctaaaatcaacttt--cctatcatggaaaacaactttcctttcc 287  Q
    ||||||||||||||||||  ||  |||||||||||||||| |||||||    
T  51412657 atggctaaaatcaactttcccccctcatggaaaacaacttccctttcc 51412610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 33463774 - 33463693
Alignment:
Q  206 gagaacatgatacgagggtgctccttatttaatcaaatggctaaaatcaactttcctatcatggaaaacaactttcctttcc 287  Q
    ||||||||||||  || |||||| ||||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||    
T  33463774 gagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaattttcccatcatggaaaacaaattccctttcc 33463693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 48569503 - 48569424
Alignment:
Q  206 gagaacatgatacgagggtgctccttatttaatcaaatggctaaaatcaactttcctatcatggaaaacaactttccttt 285  Q
    ||||||||||||  || || ||| ||||||||||||| || ||||||||||||||| ||||||| ||||||||| |||||    
T  48569503 gagaacatgataacagtgtactctttatttaatcaaacggttaaaatcaactttcccatcatgggaaacaacttcccttt 48569424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 294
Target Start/End: Complemental strand, 35839978 - 35839731
Alignment:
Q  55 tgattcaacagtgtgtgtttgttcagttcctcaaaagttctttgttgaaacttgaatgaaatggatttgtttagagaagagttgc----------tggtg 144  Q
    |||||||||||||||| ||| ||   ||||||||| ||||||||||||||||||||||||||||||||||||  ||  |||||||          |||||    
T  35839978 tgattcaacagtgtgtatttatttgcttcctcaaa-gttctttgttgaaacttgaatgaaatggatttgtttgaaggtgagttgctgattgtggttggtg 35839880  T
Q  145 agagagccatggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatg 244  Q
    | |||| ||||||||||||||||| |||||  |||||||||||       |||| |||  ||||||||||||| ||| |||||||||| ||||||  ||     
T  35839879 aaagagacatggaggagatagaatagttgggaaagatagtgtg-aaaaaattcagtgttgagagaacatgataagagtgtgctccttacttaatctgata 35839781  T
Q  245 gctaaaatcaactttcctatcatggaaaacaactttcctttcctatgcta 294  Q
    |  ||||  |||||||  ||||||| ||||||||| ||||||| ||||||    
T  35839780 gtcaaaaaaaactttctcatcatgggaaacaacttccctttcccatgcta 35839731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 287
Target Start/End: Complemental strand, 33688369 - 33688239
Alignment:
Q  154 tggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatggctaaaatc 253  Q
    ||||||||| ||||||||||| ||||||||||||       |||| |||  ||||||||| ||| ||| || ||| |||||||||||||||||||| |||    
T  33688369 tggaggagagagaattgttggggaagatagtgtgaaaaa--ttcagtgttgagagaacataataagagtgtactctttatttaatcaaatggctaagatc 33688272  T
Q  254 aactttcctatcatggaaaacaactttcctttcc 287  Q
    |||||||| || |||| |||| |||| |||||||    
T  33688271 aactttcccat-atgggaaactacttccctttcc 33688239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 1770683 - 1770816
Alignment:
Q  154 tggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatggctaaaatc 253  Q
    ||||||||| ||||||||||| ||||||| ||||       ||||||||   |||||||||||| ||| |||||| |||||||||||||||||||| |||    
T  1770683 tggaggagagagaattgttggggaagataatgtgaaaaaaattcaatgtagggagaacatgataagagtgtgctctttatttaatcaaatggctaagatc 1770782  T
Q  254 aactttcctatcatggaaaacaactttcctttcc 287  Q
    |||||||| |||||||  ||| |||| |||||||    
T  1770783 aactttcccatcatggggaactacttccctttcc 1770816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 26299684 - 26299722
Alignment:
Q  252 tcaactttcctatcatggaaaacaactttcctttcctat 290  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  26299684 tcaactttcctatcatggaaaacaactttgcttttctat 26299722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 294
Target Start/End: Complemental strand, 8145705 - 8145553
Alignment:
Q  140 tggtgagagagccatggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatc 239  Q
    ||||||| ||| || |||||||| |||||||||||||||||  ||||        |||| ||| | ||||||||||||  || || ||| ||||||||||    
T  8145705 tggtgagggagacacggaggagagagaattgttggagaaga--gtgtcaaaataattcagtgttatgagaacatgataatagtgtactctttatttaatc 8145608  T
Q  240 aaatggctaaaatcaactttcctatcatggaaaacaactttcctttcctatgcta 294  Q
    |||||||||||||||||||||||||||| | ||||||||| |||| || ||||||    
T  8145607 aaatggctaaaatcaactttcctatcataggaaacaacttcccttccccatgcta 8145553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 30544824 - 30544751
Alignment:
Q  206 gagaacatgatacgagggtgctccttatttaatcaaatggctaaaatcaactttcctatcatggaaaacaactt 279  Q
    ||||||||||||  || || ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  30544824 gagaacatgataatagtgtactctttatttaatcaaatggctaaaatcaactttcccatcatgggaaacaactt 30544751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 44154933 - 44155014
Alignment:
Q  206 gagaacatgatacgagggtgctccttatttaatcaaatggctaaaatcaactttcctatcatggaaaacaactttcctttcc 287  Q
    ||||||||||||  || || ||| |||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||    
T  44154933 gagaacatgataatagtgtactctttatttaatcaaatggctaaaatcaacttttccatcatgggaaacaacttccctttcc 44155014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 8146633 - 8146687
Alignment:
Q  233 tttaatcaaatggctaaaatcaactttcctatcatggaaaacaactttcctttcc 287  Q
    ||||||| ||||| |||||  |||||||| ||||||||||||||||| |||||||    
T  8146633 tttaatctaatggttaaaaaaaactttcccatcatggaaaacaacttccctttcc 8146687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 26021079 - 26021047
Alignment:
Q  232 atttaatcaaatggctaaaatcaactttcctat 264  Q
    |||||||| ||||||||||||||||||||||||    
T  26021079 atttaatctaatggctaaaatcaactttcctat 26021047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 9046 - 9127
Alignment:
Q  206 gagaacatgatacgagggtgctccttatttaatcaaatggctaaaatcaactttcctatcatggaaaacaactttcctttcc 287  Q
    |||||||||||| ||| |||||| |||||||||||||||||||| ||||||||||| |||||| ||||| |||| |||||||    
T  9046 gagaacatgataagagtgtgctctttatttaatcaaatggctaagatcaactttcccatcatgaaaaactacttccctttcc 9127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 47800078 - 47800211
Alignment:
Q  154 tggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatcaaatggctaaaatc 253  Q
    ||||||||| ||||||||| | ||||||| ||||       ||||||||   |||||||||||| ||| |||||| ||||||||||||||| |||  |||    
T  47800078 tggaggagagagaattgttagtgaagataatgtgaaaaaaattcaatgtagggagaacatgataagagtgtgctctttatttaatcaaatgactatgatc 47800177  T
Q  254 aactttcctatcatggaaaacaactttcctttcc 287  Q
    |||||||| |||||||  ||| |||| |||||||    
T  47800178 aactttcccatcatggggaactacttccctttcc 47800211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 41531618 - 41531654
Alignment:
Q  254 aactttcctatcatggaaaacaactttcctttcctat 290  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  41531618 aactttcctatcatggaaaagaacttccctttcctat 41531654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 287
Target Start/End: Original strand, 6007539 - 6007686
Alignment:
Q  140 tggtgagagagccatggaggagatagaattgttggagaagatagtgtgnnnnnnnttcaatgtgaagagaacatgatacgagggtgctccttatttaatc 239  Q
    |||||||||||  ||||| |||| ||||||||| |  |||||||||||       |||| |||   ||||||||||||  || |||||| ||||||||||    
T  6007539 tggtgagagagagatggaagagagagaattgtttggaaagatagtgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatc 6007638  T
Q  240 aaatggctaaaatcaactttcctatcatggaaaacaactttcctttcc 287  Q
    ||||||| |||||||||||||| ||||||| |||||| || |||||||    
T  6007639 aaatggccaaaatcaactttcccatcatgggaaacaaattccctttcc 6007686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 35263281 - 35263348
Alignment:
Q  227 tccttatttaatcaaatggctaaaatcaactttcctatcatggaaaacaactttcctttcctatgcta 294  Q
    |||||| |||||| ||||| ||||| ||||||| | || ||||||||||||| |||||||| ||||||    
T  35263281 tccttacttaatctaatggataaaaacaacttttccatgatggaaaacaactatcctttcccatgcta 35263348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 54901366 - 54901446
Alignment:
Q  206 gagaacatgatacgagggtgctccttatttaatcaaatggctaaaatcaactttcctatcatggaaaacaactttcctttc 286  Q
    ||||||||||||  || |||||| ||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||    
T  54901366 gagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaagtttcccatcatggaaaacaaattccctttc 54901446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 33862141 - 33862221
Alignment:
Q  205 agagaacatgatacgagggtgctccttatttaatcaaatggctaaaatcaactttcctatcatggaaaacaactttccttt 285  Q
    ||||||||||||| ||| ||| || ||||||||||||| |||||| ||||||||| | ||||| | |||| |||| |||||    
T  33862141 agagaacatgataagagtgtgttctttatttaatcaaagggctaagatcaacttttccatcataggaaactacttcccttt 33862221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 50305691 - 50305659
Alignment:
Q  232 atttaatcaaatggctaaaatcaactttcctat 264  Q
    |||||||| ||||||||||||||||||||||||    
T  50305691 atttaatctaatggctaaaatcaactttcctat 50305659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 15176 - 15117
Alignment:
Q  205 agagaacatgatacgagggtgctccttatttaatcaaatggctaaaatcaactttcctat 264  Q
    ||||| ||||||| ||  |||||| |||||||||||||||||||||||||||| ||||||    
T  15176 agagagcatgataagattgtgctcattatttaatcaaatggctaaaatcaactgtcctat 15117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University