View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3615_low_16 (Length: 299)
Name: NF3615_low_16
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 44 - 259
Target Start/End: Complemental strand, 25068867 - 25068664
Alignment:
| Q |
44 |
ggaccacattgatctagattttttaggaatggtgaaatggattcaacacgattagctccgccaccgacgaataacatgaatttagaattgtgcctcatca |
143 |
Q |
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| T |
25068867 |
ggaccacattgatctacattttttaggaatggtgaaatggattcaacacgattagctccgccaccgacgaataacatgaatttagaattgtgcctgatca |
25068768 |
T |
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| Q |
144 |
aagaaaaatgttagtttctgtgtcacttttcccaggcttttcacctgtgagtgtaaactctgactatatatggattgggtaaattgcttaatatatttcg |
243 |
Q |
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| T |
25068767 |
aagaaaaatgttagtttctgtgtcact-----------tttcacctgtgagtgtaaactctgactatatat-gattgggtaaattgcttaatatatttcg |
25068680 |
T |
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| Q |
244 |
ccattttataaggtct |
259 |
Q |
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| T |
25068679 |
ccattttataaggtct |
25068664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 281
Target Start/End: Complemental strand, 25094332 - 25094153
Alignment:
| Q |
110 |
acgaataacatgaatttagaattgtgcctcatcaaagaaaaatg------ttagtttctgtgtcacttttcccaggcttttcacc-tgtgagtgtaaa-- |
200 |
Q |
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|||||||||| ||||| |||| ||||||| || ||||||||||| |||||| | | |||||||||||||| |||||||| || ||||| || |
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| T |
25094332 |
acgaataacaggaattcagaactgtgcctaattaaagaaaaatgctgttcttagttcccatatcacttttcccaggtttttcaccatgcaagtgtgaact |
25094233 |
T |
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| Q |
201 |
ctctgactatatatggattgggtaaattgcttaatatatttcgccattttataaggtctatgtctttagtgaatgttttat |
281 |
Q |
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| T |
25094232 |
ctctgactatatat-gattgagtgaattgcttaaaatatttcaccattttatgagttttatgtctttagtgaatgttttat |
25094153 |
T |
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