View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3615_low_18 (Length: 277)

Name: NF3615_low_18
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3615_low_18
NF3615_low_18
[»] scaffold0356 (2 HSPs)
scaffold0356 (105-261)||(4749-4905)
scaffold0356 (1-76)||(4934-5009)
[»] chr8 (4 HSPs)
chr8 (105-261)||(14107327-14107483)
chr8 (105-261)||(33857075-33857231)
chr8 (1-76)||(14107512-14107587)
chr8 (1-52)||(33857267-33857318)
[»] chr4 (2 HSPs)
chr4 (105-261)||(31925838-31925994)
chr4 (1-52)||(31925751-31925802)
[»] chr3 (4 HSPs)
chr3 (105-261)||(41759057-41759213)
chr3 (119-261)||(11817736-11817881)
chr3 (1-52)||(41759249-41759300)
chr3 (16-52)||(11817570-11817606)
[»] chr1 (2 HSPs)
chr1 (105-261)||(16046049-16046205)
chr1 (1-76)||(16045945-16046020)
[»] scaffold0003 (2 HSPs)
scaffold0003 (119-261)||(190763-190908)
scaffold0003 (16-52)||(190596-190632)
[»] scaffold0316 (2 HSPs)
scaffold0316 (119-261)||(5939-6082)
scaffold0316 (1-60)||(5749-5808)
[»] chr6 (1 HSPs)
chr6 (225-261)||(11974866-11974902)


Alignment Details
Target: scaffold0356 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 105 - 261
Target Start/End: Complemental strand, 4905 - 4749
Alignment:
Q  105 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctctgttcatatcccacacaaagtcatggggcgaaggatttgaac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  4905 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggcgaaggatttgaac 4806  T
Q  205 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4805 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 4749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5009 - 4934
Alignment:
Q  1 aaaaactaatcttggtaattttgattatagatagaacaattttcaattttaatgtcaaatcacctataatgttact 76  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||    
T  5009 aaaaactaatcttgataattttgattatagatggaacaattttcaattttaatgtcacatcaccaataacgttact 4934  T

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Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 105 - 261
Target Start/End: Complemental strand, 14107483 - 14107327
Alignment:
Q  105 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctctgttcatatcccacacaaagtcatggggcgaaggatttgaac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  14107483 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggcgaaggatttgaac 14107384  T
Q  205 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14107383 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 14107327  T

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Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 105 - 261
Target Start/End: Complemental strand, 33857231 - 33857075
Alignment:
Q  105 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctctgttcatatcccacacaaagtcatggggcgaaggatttgaac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  33857231 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggtgaaggatttgaac 33857132  T
Q  205 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857131 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 33857075  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14107587 - 14107512
Alignment:
Q  1 aaaaactaatcttggtaattttgattatagatagaacaattttcaattttaatgtcaaatcacctataatgttact 76  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||    
T  14107587 aaaaactaatcttgataattttgattatagatggaacaattttcaattttaatgtcacatcaccaataacgttact 14107512  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33857318 - 33857267
Alignment:
Q  1 aaaaactaatcttggtaattttgattatagatagaacaattttcaattttaa 52  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33857318 aaaaactaatcttggtaattttgattatagatggaacaattttcaattttaa 33857267  T

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Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 105 - 261
Target Start/End: Original strand, 31925838 - 31925994
Alignment:
Q  105 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctctgttcatatcccacacaaagtcatggggcgaaggatttgaac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  31925838 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggtgaaggatttgaac 31925937  T
Q  205 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31925938 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 31925994  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31925751 - 31925802
Alignment:
Q  1 aaaaactaatcttggtaattttgattatagatagaacaattttcaattttaa 52  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31925751 aaaaactaatcttggtaattttgattatagatggaacaattttcaattttaa 31925802  T

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Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 105 - 261
Target Start/End: Complemental strand, 41759213 - 41759057
Alignment:
Q  105 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctctgttcatatcccacacaaagtcatggggcgaaggatttgaac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  41759213 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggtgaaggatttgaac 41759114  T
Q  205 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41759113 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 41759057  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 11817736 - 11817881
Alignment:
Q  119 ttgattcattaaaaccatttctaaagattaagaaaattggtctctgttcatatcccacacaaagtcatggggcgaaggatttgaaccacaatgttcattg 218  Q
    |||||||||||||||||| |||||||||| ||||| || |||||| ||||| |||||||||||||||| ||||||||||||||||| |  ||||||  ||    
T  11817736 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtcccacacaaagtcatagggcgaaggatttgaactatcatgttccatg 11817835  T
Q  219 tctctt---aagaagatctataattgtattttggtgctcattaatt 261  Q
    ||||||   |||||||||||||||| |||||| ||| |||||||||    
T  11817836 tctcttaaaaagaagatctataattttatttttgtgttcattaatt 11817881  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41759300 - 41759249
Alignment:
Q  1 aaaaactaatcttggtaattttgattatagatagaacaattttcaattttaa 52  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41759300 aaaaactaatcttggtaattttgattatagatggaacaattttcaattttaa 41759249  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 11817570 - 11817606
Alignment:
Q  16 taattttgattatagatagaacaattttcaattttaa 52  Q
    ||||||||||||||||| |||||||||||||||||||    
T  11817570 taattttgattatagatggaacaattttcaattttaa 11817606  T

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Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 105 - 261
Target Start/End: Original strand, 16046049 - 16046205
Alignment:
Q  105 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctctgttcatatcccacacaaagtcatggggcgaaggatttgaac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||||    
T  16046049 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacacagtcatagggcgaagaatttgaac 16046148  T
Q  205 cacaatgttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 261  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16046149 cacaattttcattgtctcttaagaagatctataattgtattttggtgctcattaatt 16046205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 16045945 - 16046020
Alignment:
Q  1 aaaaactaatcttggtaattttgattatagatagaacaattttcaattttaatgtcaaatcacctataatgttact 76  Q
    ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  16045945 aaaaattaatcttggtaattttgattatagatggaacaatttttaattttaatgtcaaatcacctataatgttact 16046020  T

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Target: scaffold0003 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 190763 - 190908
Alignment:
Q  119 ttgattcattaaaaccatttctaaagattaagaaaattggtctctgttcatatcccacacaaagtcatggggcgaaggatttgaaccacaatgttcattg 218  Q
    |||||||||||||||||| |||||||||| ||||| || |||||| ||||| ||||||| |||||||| |||||||||||||||||||  ||||||  ||    
T  190763 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtcccacagaaagtcatagggcgaaggatttgaaccatcatgttccatg 190862  T
Q  219 tctctt---aagaagatctataattgtattttggtgctcattaatt 261  Q
    ||||||   |||||||||||||||| |||||||||| |||||||||    
T  190863 tctcttaaaaagaagatctataattttattttggtgttcattaatt 190908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 190596 - 190632
Alignment:
Q  16 taattttgattatagatagaacaattttcaattttaa 52  Q
    ||||||||||||||||| |||||||||||||||||||    
T  190596 taattttgattatagatggaacaattttcaattttaa 190632  T

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Target: scaffold0316 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 5939 - 6082
Alignment:
Q  119 ttgattcattaaaaccatttctaaagattaagaaaattggtctctgttcatatcccacacaaagtcatggggcgaaggatttgaaccacaatgttcattg 218  Q
    ||||||||||||||||  ||||||||||| ||||| || |||||| ||||| |||||||||||||||| | | |||||||||||||||  ||||||  ||    
T  5939 ttgattcattaaaacc--ttctaaagatttagaaagtttgtctctattcatgtcccacacaaagtcatagagtgaaggatttgaaccatgatgttccatg 6036  T
Q  219 tctctt---aagaagatctataattgtattttggtgctcattaatt 261  Q
    ||||||   ||||||||||||||||||||||||| |||||||||||    
T  6037 tctcttaaaaagaagatctataattgtattttggagctcattaatt 6082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5749 - 5808
Alignment:
Q  1 aaaaactaatcttggtaattttgattatagatagaacaattttcaattttaatgtcaaat 60  Q
    |||||| ||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||    
T  5749 aaaaaccaatcttgataattttgattatagatggaacagttttcaattttaacgtcaaat 5808  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 11974902 - 11974866
Alignment:
Q  225 aagaagatctataattgtattttggtgctcattaatt 261  Q
    ||||||||||||||||||||||||| |||||||||||    
T  11974902 aagaagatctataattgtattttggagctcattaatt 11974866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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