View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3615_low_22 (Length: 251)
Name: NF3615_low_22
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 12740347 - 12740533
Alignment:
| Q |
57 |
ctacagaccaatagcagaataggggtcaattggtctatcagaatcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccaga |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12740347 |
ctacagaccaatagcagaataggggtcaattggtctatcagaatcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccaga |
12740446 |
T |
|
| Q |
157 |
gtttacaccagggccttcagttttgaaaatggaacaactccacccttcaccacatttgcagaatgtttcactgccattgtctctgct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12740447 |
gtttacaccagggccttcagttttgaaaatggaacaactccacccttcaccacatttgcagaatgtttcactgccattgtcactgct |
12740533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 12803171 - 12803357
Alignment:
| Q |
57 |
ctacagaccaatagcagaataggggtcaattggtctatcagaatcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccaga |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12803171 |
ctacagaccaatagcagaataggggtcaattggtctatcagaatcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccaga |
12803270 |
T |
|
| Q |
157 |
gtttacaccagggccttcagttttgaaaatggaacaactccacccttcaccacatttgcagaatgtttcactgccattgtctctgct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12803271 |
gtttacaccagggccttcagttttgaaaatggaacaactccacccttcaccacatttgcagaatgtttcactgccattgtcactgct |
12803357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 12732882 - 12733020
Alignment:
| Q |
99 |
atcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccagagtttacaccagggccttcagttttgaaaatggaacaactcca |
198 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||| |||||||| |||||||| |||| | || |||| |||||||| | ||||||||||||||||| |
|
|
| T |
12732882 |
atcaacatttacaatcacagttatattgttgagtgcaatcagcaaatcccttgcctgagtctgcatcaggaccttcagtcctaaaaatggaacaactcca |
12732981 |
T |
|
| Q |
199 |
cccttcaccacatttgcagaatgtttcactgccattgtc |
237 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12732982 |
tccttcaccacacttgcagaatgtttcactgccattgtc |
12733020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 12795684 - 12795822
Alignment:
| Q |
99 |
atcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccagagtttacaccagggccttcagttttgaaaatggaacaactcca |
198 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||| |||||||| |||||||| |||| | || |||| |||||||| | ||||||||||||||||| |
|
|
| T |
12795684 |
atcaacatttacaatcacagttatattgttgagtgcaatcagcaaatcccttgcctgagtctgcatcaggaccttcagtcctaaaaatggaacaactcca |
12795783 |
T |
|
| Q |
199 |
cccttcaccacatttgcagaatgtttcactgccattgtc |
237 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12795784 |
tccttcaccacacttgcagaatgtttcactgccattgtc |
12795822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University