View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3615_low_25 (Length: 246)

Name: NF3615_low_25
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3615_low_25
NF3615_low_25
[»] chr3 (45 HSPs)
chr3 (4-159)||(26653588-26653743)
chr3 (1-159)||(20046560-20046718)
chr3 (1-158)||(19956525-19956682)
chr3 (1-158)||(19838834-19838991)
chr3 (1-158)||(19819001-19819158)
chr3 (1-159)||(26647441-26647602)
chr3 (1-158)||(20036123-20036280)
chr3 (1-158)||(19832310-19832468)
chr3 (1-159)||(17115153-17115311)
chr3 (1-159)||(20015721-20015879)
chr3 (16-159)||(19812723-19812866)
chr3 (1-159)||(19853937-19854098)
chr3 (1-159)||(24839494-24839655)
chr3 (16-159)||(19951561-19951707)
chr3 (1-159)||(19858509-19858670)
chr3 (1-159)||(19849436-19849594)
chr3 (1-159)||(26652155-26652316)
chr3 (1-159)||(19944154-19944315)
chr3 (155-231)||(47531976-47532052)
chr3 (10-159)||(19989968-19990114)
chr3 (158-231)||(51419276-51419349)
chr3 (157-225)||(26141445-26141513)
chr3 (156-228)||(41189678-41189750)
chr3 (157-228)||(20764830-20764901)
chr3 (31-143)||(20033884-20033999)
chr3 (160-228)||(11347840-11347908)
chr3 (164-228)||(36707350-36707414)
chr3 (156-207)||(26754830-26754881)
chr3 (159-228)||(8076507-8076576)
chr3 (164-225)||(31456806-31456867)
chr3 (160-221)||(35965700-35965761)
chr3 (164-225)||(49607531-49607592)
chr3 (156-228)||(30801647-30801719)
chr3 (164-228)||(33644314-33644378)
chr3 (156-228)||(35536740-35536812)
chr3 (156-228)||(43746453-43746525)
chr3 (164-228)||(53982125-53982189)
chr3 (182-228)||(39670125-39670171)
chr3 (158-196)||(41080843-41080881)
chr3 (158-228)||(42823225-42823295)
chr3 (159-228)||(33118767-33118836)
chr3 (157-228)||(1758374-1758442)
chr3 (164-228)||(9563113-9563177)
chr3 (156-228)||(24699869-24699940)
chr3 (164-228)||(48587023-48587087)
[»] chr8 (18 HSPs)
chr8 (1-150)||(22655836-22655985)
chr8 (1-159)||(22689193-22689354)
chr8 (4-159)||(11544510-11544665)
chr8 (159-228)||(43414498-43414567)
chr8 (161-228)||(5957944-5958011)
chr8 (164-228)||(9122299-9122363)
chr8 (159-228)||(15048098-15048167)
chr8 (160-228)||(4854781-4854849)
chr8 (160-228)||(37038593-37038661)
chr8 (176-228)||(42710228-42710280)
chr8 (164-225)||(15197450-15197511)
chr8 (163-228)||(40423864-40423929)
chr8 (155-228)||(42354501-42354574)
chr8 (160-228)||(8841350-8841418)
chr8 (164-228)||(14548036-14548100)
chr8 (158-205)||(15258845-15258892)
chr8 (176-228)||(14055526-14055578)
chr8 (160-228)||(32032838-32032906)
[»] chr7 (17 HSPs)
chr7 (12-159)||(12495522-12495673)
chr7 (1-159)||(12579608-12579769)
chr7 (12-159)||(12519326-12519474)
chr7 (156-228)||(35522990-35523062)
chr7 (159-225)||(46374741-46374807)
chr7 (160-228)||(26296758-26296826)
chr7 (159-228)||(31735991-31736060)
chr7 (164-228)||(19329956-19330020)
chr7 (160-228)||(41423796-41423864)
chr7 (160-228)||(46033719-46033787)
chr7 (161-228)||(16374743-16374810)
chr7 (159-226)||(21234517-21234584)
chr7 (164-228)||(3434666-3434730)
chr7 (164-228)||(8080305-8080369)
chr7 (164-228)||(11044292-11044356)
chr7 (163-228)||(1766702-1766767)
chr7 (160-228)||(22343475-22343543)
[»] chr5 (16 HSPs)
chr5 (1-159)||(26354447-26354605)
chr5 (1-159)||(9815474-9815632)
chr5 (160-228)||(15409528-15409596)
chr5 (176-228)||(36732876-36732928)
chr5 (159-228)||(31009102-31009171)
chr5 (164-228)||(2740388-2740452)
chr5 (164-228)||(14831928-14831992)
chr5 (164-228)||(18520806-18520870)
chr5 (164-228)||(31132448-31132512)
chr5 (158-228)||(3921181-3921251)
chr5 (158-228)||(26720630-26720700)
chr5 (158-228)||(26990379-26990449)
chr5 (159-228)||(2252085-2252154)
chr5 (157-217)||(6259916-6259976)
chr5 (156-228)||(6679812-6679884)
chr5 (164-228)||(40145521-40145585)
[»] chr1 (16 HSPs)
chr1 (1-159)||(1717657-1717818)
chr1 (1-159)||(38483413-38483571)
chr1 (160-228)||(32813361-32813429)
chr1 (158-228)||(26440838-26440908)
chr1 (162-228)||(49811447-49811513)
chr1 (164-228)||(27564657-27564721)
chr1 (164-228)||(37649312-37649376)
chr1 (156-228)||(45044474-45044546)
chr1 (164-228)||(48716204-48716268)
chr1 (160-228)||(51898601-51898669)
chr1 (164-228)||(2582029-2582093)
chr1 (164-228)||(9474798-9474862)
chr1 (164-228)||(26274543-26274607)
chr1 (176-228)||(38632255-38632307)
chr1 (164-228)||(47452242-47452306)
chr1 (158-228)||(47748556-47748626)
[»] chr4 (18 HSPs)
chr4 (67-159)||(6397323-6397417)
chr4 (3-113)||(6398918-6399029)
chr4 (157-228)||(29240000-29240071)
chr4 (158-228)||(31910306-31910376)
chr4 (159-228)||(50052345-50052414)
chr4 (159-228)||(50526088-50526157)
chr4 (164-228)||(24995029-24995093)
chr4 (164-228)||(41236461-41236525)
chr4 (160-228)||(41823996-41824064)
chr4 (164-228)||(48182971-48183035)
chr4 (182-228)||(11511402-11511448)
chr4 (163-228)||(47104658-47104723)
chr4 (163-228)||(56300086-56300151)
chr4 (156-228)||(17983657-17983729)
chr4 (156-228)||(29589654-29589726)
chr4 (156-228)||(19670630-19670702)
chr4 (164-228)||(23608349-23608413)
chr4 (164-228)||(54473455-54473519)
[»] chr2 (23 HSPs)
chr2 (160-231)||(36168947-36169018)
chr2 (159-231)||(40613819-40613891)
chr2 (159-228)||(2533237-2533306)
chr2 (164-228)||(7465657-7465721)
chr2 (164-228)||(17473134-17473198)
chr2 (160-228)||(20700929-20700997)
chr2 (164-228)||(28863569-28863633)
chr2 (164-228)||(32505570-32505634)
chr2 (160-231)||(38273061-38273131)
chr2 (159-228)||(42257307-42257376)
chr2 (172-228)||(9058594-9058650)
chr2 (164-228)||(19930742-19930806)
chr2 (156-228)||(44152041-44152113)
chr2 (156-228)||(2997401-2997473)
chr2 (164-228)||(13438457-13438521)
chr2 (164-228)||(28381577-28381641)
chr2 (65-159)||(39191595-39191691)
chr2 (156-228)||(41758701-41758773)
chr2 (157-228)||(21301415-21301486)
chr2 (182-228)||(33436040-33436086)
chr2 (158-207)||(3440114-3440163)
chr2 (164-225)||(5574422-5574483)
chr2 (159-228)||(17823902-17823971)
[»] scaffold1268 (1 HSPs)
scaffold1268 (161-228)||(848-915)
[»] scaffold1267 (1 HSPs)
scaffold1267 (161-228)||(848-915)
[»] chr6 (8 HSPs)
chr6 (160-228)||(31976362-31976430)
chr6 (160-228)||(31110679-31110747)
chr6 (164-228)||(29857941-29858005)
chr6 (164-228)||(32869792-32869856)
chr6 (156-189)||(26466795-26466828)
chr6 (159-228)||(30341277-30341346)
chr6 (160-228)||(15989960-15990028)
chr6 (164-228)||(22880580-22880644)
[»] scaffold0110 (1 HSPs)
scaffold0110 (158-228)||(8779-8849)
[»] scaffold0316 (1 HSPs)
scaffold0316 (156-208)||(17237-17289)
[»] scaffold0237 (1 HSPs)
scaffold0237 (164-228)||(4143-4207)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 26653743 - 26653588
Alignment:
Q  4 atagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcattat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26653743 atagactcaaatccaactagctcagcaactctcaagcatataacaaatgagagcatgtttgtatccaaatccttcttaaatggtacccaaatttcattat 26653644  T
Q  104 ttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26653643 ttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 26653588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 20046718 - 20046560
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||  |||||| || |||||| |||||||||||||||||||||||||||||||||| |    
T  20046718 tctatagactcaaatccaacaagctcagaaactctcaggcatatagaaaatgaaagtatttttttatccaaatccttcttaaatggtacccaaatttcgt 20046619  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  20046618 tatttggataaaaaattccacacttgtcaggatatctaacatatggacgccaaagaaaa 20046560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 19956682 - 19956525
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  19956682 tctatagactcaaatccaaccagctcggaaactctcaagcatataacaaatgagataatttttgtatccaaatccttcttaaatggtaccaaaatttcat 19956583  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaa 158  Q
     |||||||||||| |  ||||| || | || ||||| |||||||||||||||||||||    
T  19956582 catttggataaaatagcccacatttatgagaatatcgaacatatggacgccaaagaaa 19956525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 19838991 - 19838834
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||||||||||||||||||||| | |||||| | |||||||||||||||||  ||||||||||| |||||| |||||||||||||| |||||||||    
T  19838991 tctatagactcaaatccaacaagctcggaaactctaaggcatataacaaatgagataatttttgtatctaaatccctcttaaatggtaccaaaatttcat 19838892  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaa 158  Q
     |||||||||||||| | ||||||| | || ||||| |||||||||||||||||||||    
T  19838891 catttggataaaacagttcacacttatcagaatatcgaacatatggacgccaaagaaa 19838834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 19819158 - 19819001
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    ||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  19819158 tctatggactcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaatttttgtatccaaatccatcttaaatggtaccaaaattccat 19819059  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaa 158  Q
     ||| ||||||||||   ||||||| | || ||||| |||||||||||||||||||||    
T  19819058 cattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaa 19819001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 26647602 - 26647441
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatc---caaatccttcttaaatggtacccaaattt 97  Q
    |||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |  |||   |||||| ||||||||||||||| ||||||    
T  26647602 tctatagagtcgaatccaacaagctcagaaactctcaagcatataacaaatgagagcatttgttcatcaaccaaatctttcttaaatggtaccgaaattt 26647503  T
Q  98 cattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    ||| |||||||||||||| | ||||||| | || |||||||||||| |||||||||||||||    
T  26647502 catcatttggataaaacaattcacacttatcagcatatctaacataaggacgccaaagaaaa 26647441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 20036123 - 20036280
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||| || ||||||    
T  20036123 tctatagactcaaatccaaccagctcagaaaccctcaagcatataacaaatgagataatttttgtatccaaatacttcgtaaatggtaccaaagtttcat 20036222  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaa 158  Q
     ||||||||||| || | || |||| | || ||||| |||||||||||||||||||||    
T  20036223 catttggataaagcagttcaaacttatcagaatatcgaacatatggacgccaaagaaa 20036280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 19832468 - 19832310
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcattttt-gtatccaaatccttcttaaatggtacccaaatttca 99  Q
    ||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||| ||    
T  19832468 tctatggactcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaattttttgtatccaaatccatcttaaatggtaccaaaattcca 19832369  T
Q  100 ttatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaa 158  Q
    | ||| ||||||||||   ||||||| | || ||||| |||||||||||||||||||||    
T  19832368 tcattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaa 19832310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 17115311 - 17115153
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||  ||||| ||||||||||| | |||||| || |||||||||||||| | ||||||| |||||||||| || || ||||||||| |||||||||    
T  17115311 tctatagtgtcaaacccaacaagctcggaaactctgaaacatataacaaatgacaacatttttttatccaaatcttttttgaatggtaccaaaatttcat 17115212  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
     |||||||||||||||||||||||| | || ||||||||  ||||||||||||||||||    
T  17115211 catttggataaaacattccacacttatcagcatatctaatgtatggacgccaaagaaaa 17115153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 20015721 - 20015879
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||| | |||||||||| ||||||||||||||  ||| | |||    
T  20015721 tctatagagtcaaatccaacaagctcggaaactcttaagcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtacaaaaaatgcat 20015820  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
     ||||||||||||||   ||||||| | || |||||| | |||||||||||||||||||    
T  20015821 catttggataaaacaaatcacacttatcagcatatctgaaatatggacgccaaagaaaa 20015879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 19812866 - 19812723
Alignment:
Q  16 ccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcattatttggataaaaca 115  Q
    ||||| ||||||| |  ||||||||||||||||||||||||||||||  |||| |||||  | || ||||||||| ||||||||| ||||||||||||||    
T  19812866 ccaactagctcagaacatctcaagcatataacaaatgagagcattttgttatctaaatctattttgaatggtaccgaaatttcatcatttggataaaaca 19812767  T
Q  116 ttccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
     | ||||||| |  | ||||||||||||||||||||||||||||    
T  19812766 atgcacacttatcggcatatctaacatatggacgccaaagaaaa 19812723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 19854098 - 19853937
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatcca---aatccttcttaaatggtacccaaattt 97  Q
    |||||| ||||||| ||||| ||||||| ||||||||||||| | |||||| ||||||||| | ||||||   |||| |||||||||||||||| |||||    
T  19854098 tctataaactcaaacccaactagctcagaaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccgaattt 19853999  T
Q  98 cattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    ||| ||| || ||||||||||||||||| | || ||| |||||||| |||||||||| ||||    
T  19853998 catcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaa 19853937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 24839494 - 24839655
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcattt-ttgta--tccaaatccttcttaaatggtacccaaattt 97  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| || ||   ||||||| ||||||||||||||| || |||    
T  24839494 tctatagactcaaatccaactagctcagaaactctcaagaatataacaaatgagagcatttgttctactaccaaatctttcttaaatggtaccaaagttt 24839593  T
Q  98 cattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    |||  ||||||||||||| ||||||||| | |  ||||  |||||| |||||||||| ||||    
T  24839594 catcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaa 24839655  T

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Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 19951707 - 19951561
Alignment:
Q  16 ccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtat---ccaaatccttcttaaatggtacccaaatttcattatttggataaa 112  Q
    ||||| ||||||| |||||||||||||||||||||||| | ||||| |  ||   ||||||| ||||||||||| ||| ||||||| | ||| |||||||    
T  19951707 ccaactagctcagaaactctcaagcatataacaaatgacaacatttgttgatccaccaaatctttcttaaatggcaccaaaatttcttcattcggataaa 19951608  T
Q  113 acattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    ||||||||||||| | || ||||||||||||||||||||||| ||||    
T  19951607 acattccacacttatcagcatatctaacatatggacgccaaataaaa 19951561  T

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Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 19858670 - 19858509
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtat---ccaaatccttcttaaatggtacccaaattt 97  Q
    |||||| ||||||| ||||| ||||||| ||||||||| ||||||| |||||||||||||| | |||   ||||||| |||| | ||| |||||||||||    
T  19858670 tctataaactcaaacccaactagctcagaaactctcaaacatataataaatgagagcatttgtttatcgaccaaatctttctaatatgatacccaaattt 19858571  T
Q  98 cattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    | | |||||||||||||| ||||||||| |  | ||||||||| || |||||||||| ||||    
T  19858570 cgtcatttggataaaacagtccacacttatctgcatatctaacgtaaggacgccaaataaaa 19858509  T

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Target: chr3; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 19849594 - 19849436
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||||||||||||||  ||||||| ||||||||| ||| |||||||||| || |||| | ||||  |||| |||| |||    ||||||||| |||    
T  19849594 tctatagactcaaatccaatgagctcagaaactctcaaacatgtaacaaatgaaagtatttctttatctgaatctttctcaaacaacacccaaattccat 19849495  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
     ||||||||||||||||||| | || | || ||||||| ||||||||||||||||||||    
T  19849494 catttggataaaacattccataattatgagcatatctagcatatggacgccaaagaaaa 19849436  T

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Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 26652316 - 26652155
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtat---ccaaatccttcttaaatggtacccaaattt 97  Q
    |||||||||||||||||||| ||||||| ||||||  ||||| |||||||||||||||||| | |||   ||||||| ||||||||||||||| || ||     
T  26652316 tctatagactcaaatccaactagctcagaaactctttagcatttaacaaatgagagcatttgtatatccaccaaatctttcttaaatggtaccaaagttc 26652217  T
Q  98 cattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    | | |||||||||||||| | ||||||| |  | ||| | |||||| |||||||||| ||||    
T  26652216 cgtcatttggataaaacacttcacacttatctgcataccgaacataaggacgccaaataaaa 26652155  T

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Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 19944315 - 19944154
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcattt-ttgta--tccaaatccttcttaaatggtacccaaattt 97  Q
    |||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||| || ||   ||||||| || |||||||||||| || |||    
T  19944315 tctatagactcaaatccaactagctcggaaactctcaagaatataacaaatgagagcatttgttctactaccaaatcttttttaaatggtaccaaagttt 19944216  T
Q  98 cattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    ||| |||||||||| | | ||||||||| | || ||||  |||||| ||||| |||| ||||    
T  19944215 catcatttggataatatactccacacttatcagcatattgaacataaggacggcaaataaaa 19944154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 47532052 - 47531976
Alignment:
Q  155 gaaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaatag 231  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||   ||||||||| |||||||||||||    
T  47532052 gaaaaggaaaatgttacataaacaccctttattcccatacacacttgtacattccatacattaggaagagagaatag 47531976  T

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Target: chr3; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 19990114 - 19989968
Alignment:
Q  10 tcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcattatttggat 109  Q
    |||| |||||||||||||| ||||||||  ||| |||||||||| |||||| |   |||||||||  ||||||||   |||||| || ||| ||||||||    
T  19990114 tcaattccaacaagctcagaaactctcatacatctaacaaatgacagcattgtgtcatccaaatcagtcttaaat---acccaagttccatcatttggat 19990018  T
Q  110 aaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    |||||| | ||||||| | || | ||||||||||||||||||||||||||    
T  19990017 aaaacagttcacacttctcagcaaatctaacatatggacgccaaagaaaa 19989968  T

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Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 51419276 - 51419349
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaatag 231  Q
    ||||||||||||||||||||||  |||||| |||||||| |||||||||| ||||||||| |||||||||||||    
T  51419276 aaggaaaatgttacataaacaccttttatttccatacacccttgtacaccccatacattaggaagagagaatag 51419349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 26141445 - 26141513
Alignment:
Q  157 aaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagaga 225  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||||||||| ||||||||| |||||||    
T  26141445 aaaggaaaatgttacatagacaccctttatttccatacactcttgtacaccccatacattaggaagaga 26141513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 41189678 - 41189750
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||||||||  ||||||||| ||||| ||||    
T  41189678 aaaaggaaaatgttacatagacaccctttatttccatacactcttgtacactccatacattaggaagaaagaa 41189750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 20764830 - 20764901
Alignment:
Q  157 aaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||||| ||||  ||||||| ||||||| |||||||||| ||||||||| ||||||||||    
T  20764830 aaaggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaa 20764901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 20033884 - 20033999
Alignment:
Q  31 actctcaagcatataacaaatgagagcatttttgtat---ccaaatccttcttaaatggtacccaaatttcattatttggataaaacattccacacttgt 127  Q
    ||||||| ||||||||||||||| ||||||| |  ||   ||||||| ||||||||||||||  ||||||||| ||| |||||||||| || |||||| |    
T  20033884 actctcatgcatataacaaatgacagcatttgttgatccaccaaatcattcttaaatggtactgaaatttcatcattcggataaaacagtctacacttat 20033983  T
Q  128 taggatatctaacata 143  Q
     || ||||||||||||    
T  20033984 cagcatatctaacata 20033999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 11347840 - 11347908
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||| |||||| |||| |||||||||||||||| ||| |||||| ||||||||| ||||||||||    
T  11347840 ggaaaatggtacatagacaccctttattcccatacacccttatacaccccatacattaggaagagagaa 11347908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 36707350 - 36707414
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||||  |||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  36707350 aatgatacatagacaccttttattcccatacattcttgtacacctcatgcattaggaagagagaa 36707414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 26754881 - 26754830
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacc 207  Q
    ||||||||||||||||||| |||||||||||| ||||||||  |||||||||    
T  26754881 aaaaggaaaatgttacatagacactctttatttccatacacctttgtacacc 26754830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 8076576 - 8076507
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||| ||||  ||||||| |||||||| ||||||||| ||| || || ||||||||||    
T  8076576 aggaaaatgttacatagacaccatttattctcatacacttttgtacaccccatgcactaggaagagagaa 8076507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 31456867 - 31456806
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagaga 225  Q
    |||| ||||||||||| |||||||||||| ||| |||||||||| ||| ||||| |||||||    
T  31456867 aatgatacataaacaccctttattcccatgcacccttgtacaccccatgcattaggaagaga 31456806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 35965700 - 35965761
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaa 221  Q
    ||||||||||||||| ||||  ||||||| ||||||| ||||||||||||||  ||||||||    
T  35965700 ggaaaatgttacatagacaccttttattctcatacacccttgtacacctcatgaattaagaa 35965761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 49607592 - 49607531
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagaga 225  Q
    |||| |||||| |||| |||||||||||||||| ||||||||| |||| ||||| |||||||    
T  49607592 aatgatacatagacaccctttattcccatacacccttgtacacgtcatgcattaggaagaga 49607531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 30801647 - 30801719
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||| ||||  ||||||| ||||||| |||||||||| |||  | || ||||||||||    
T  30801647 aaaaggaaaatgttacatagacaccttttattctcatacacccttgtacaccccatgtactaggaagagagaa 30801719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 33644378 - 33644314
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| ||| |||||| ||| ||||| ||||||||||    
T  33644378 aatgatacatagacaccctttattcccatacacccttatacaccccatgcattaggaagagagaa 33644314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 35536812 - 35536740
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||| ||||  ||||||| ||||||| ||| |||||| ||| || || ||||||||||    
T  35536812 aaaaggaaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaa 35536740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 43746525 - 43746453
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||| |||||||||||||||||| |||| ||  ||||||| |||||||||||||| || || ||||| ||||    
T  43746525 aaaagaaaaatgttacataaacaccctttgttgtcatacacccttgtacacctcatgcactaggaagaaagaa 43746453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 53982189 - 53982125
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||  |||||||||| ||| ||||| ||||||||||    
T  53982189 aatgatacatagacaccctttattcccatacaaccttgtacaccccatgcattaggaagagagaa 53982125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 39670171 - 39670125
Alignment:
Q  182 tttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||    
T  39670171 tttatttccgtacacccttgtacatctcatacattaagaagagagaa 39670125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 41080881 - 41080843
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacac 196  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  41080881 aaggaaaatgttacacaaacactctttattctcatacac 41080843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 42823295 - 42823225
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||| ||||  |||| |  ||||||| ||||||||||||||  |||| ||||||||||    
T  42823295 aaggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaa 42823225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 33118767 - 33118836
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||| || |||| ||||||| |||||||| |||||||||| ||| || || | ||||||||    
T  33118767 aggaaaatgttacgtagacaccctttatttccatacacccttgtacaccccatgcactagggagagagaa 33118836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 1758374 - 1758442
Alignment:
Q  157 aaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| ||||||||||||||||||| ||||||  |||||||  ||||||||| ||| ||||| ||||||||||    
T  1758374 aaagaaaaatgttacataaacactgtttatt--catacacctttgtacacc-catgcattaggaagagagaa 1758442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 9563177 - 9563113
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| | || ||||||||||||||||  ||||||| ||||| ||||| ||||||||||    
T  9563177 aatgatacatagataccctttattcccatacacctttgtacaactcatgcattaggaagagagaa 9563113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 24699869 - 24699940
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||| |||   ||||||| |||||| |||| ||||||||||| | || ||||||||||    
T  24699869 aaaaggaaaatgttacatagacatcttttattctcataca-tcttatacacctcataaactaggaagagagaa 24699940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 48587023 - 48587087
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| ||||||||||||| || |||||||| | ||| ||||| ||||||||||    
T  48587023 aatgatacatagacaccctttattcccatatacccttgtacatcccatgcattaggaagagagaa 48587087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 22655836 - 22655985
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  22655836 tctatagactcaaatccaacaagctcagaaaccctcaaacatacaacaaatgagagaatttttgtatccaaatccttcttaaatggtaccaaaatttcat 22655935  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgc 150  Q
     ||| ||||||||||   | ||||| | || ||||| |||||||||||||    
T  22655936 cattaggataaaacagctcgcacttatcagaatatcgaacatatggacgc 22655985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 22689193 - 22689354
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtat---ccaaatccttcttaaatggtacccaaattt 97  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| | ||||| | |||   ||||||| ||| |  | || || |||||||    
T  22689193 tctatagactcaaatccaactagctcagaaactctcaagcatataacaaatgacaacatttgtttatccgccaaatctttcatcgacggcacacaaattt 22689292  T
Q  98 cattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    |||  ||||||||||||| ||||||||| | || |||||||||||| |||||||||| ||||    
T  22689293 catcctttggataaaacactccacacttatcagcatatctaacataaggacgccaaataaaa 22689354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 11544665 - 11544510
Alignment:
Q  4 atagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcattat 103  Q
    ||||||||||| ||||| ||||| | |||||||||  | ||||||||||||||  ||||| ||||||||||||||||||  |||||| || |||||| ||    
T  11544665 atagactcaaaaccaactagctcggaaactctcaatgacataacaaatgagagattttttttatccaaatccttcttaagcggtaccaaagtttcatcat 11544566  T
Q  104 ttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    |||||||||||||| || |||| |  | ||||  ||||||||| ||||||||||||    
T  11544565 ttggataaaacatttcaaacttatcggcatattgaacatatgggcgccaaagaaaa 11544510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 43414498 - 43414567
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||| |||| ||||||| |||||||| |||||||||| ||||||||| ||||||||||    
T  43414498 aggaaaatgttacatagacaccctttattgccatacacccttgtacaccccatacattaggaagagagaa 43414567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 5958011 - 5957944
Alignment:
Q  161 gaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||| || || ||||||||||    
T  5958011 gaaaatgttacataaacaccctttattctcatacacccttgtacacctcatgcactaggaagagagaa 5957944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 9122363 - 9122299
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  9122363 aatgatacatagacattctttattcccatacactcttgtacaccccatgcattaggaagagagaa 9122299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 15048098 - 15048167
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||| ||| |||| ||||||||| |||||| |||||||| | ||||||||| ||||||||||    
T  15048098 aggaaaatgttatatagacaccctttattccgatacacccttgtacatcccatacattaggaagagagaa 15048167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 4854781 - 4854849
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| ||||||||||||| |||| || |||||||| | |||||||||  |||||||||    
T  4854781 ggaaaatgttacatagacactctttattctcatatacccttgtacatcccatacattagtaagagagaa 4854849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 37038661 - 37038593
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||||||| ||||||| | |||||| |||||||||| ||| || || ||||||||||    
T  37038661 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaa 37038593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 42710228 - 42710280
Alignment:
Q  176 acactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  42710228 acaccctttattcccatacacccttgtacaccccatacattaggaagagagaa 42710280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 15197511 - 15197450
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagaga 225  Q
    |||| |||||| ||||| ||||||||||||||| |||||||||||||| ||||  |||||||    
T  15197511 aatgatacatagacactttttattcccatacacccttgtacacctcatgcatttggaagaga 15197450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 40423864 - 40423929
Alignment:
Q  163 aaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||| |||||| ||||  ||||||||||||||| ||||||||||||||  |||| ||||||||||    
T  40423864 aaatgatacatagacaccttttattcccatacacccttgtacacctcatgtattaggaagagagaa 40423929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 42354501 - 42354574
Alignment:
Q  155 gaaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||||||| ||||  ||||||| ||||||| ||| |||||| ||| || || ||||||||||    
T  42354501 gaaaaggaaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaa 42354574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 8841350 - 8841418
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| ||||  ||||||| |||||||||||||||||| ||| || || ||| ||||||    
T  8841350 ggaaaatgttacatagacaccatttattctcatacactcttgtacaccccatgcactaggaaaagagaa 8841418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 14548100 - 14548036
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||  |||||||||| ||| ||||| ||||||||||    
T  14548100 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaa 14548036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 15258845 - 15258892
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtaca 205  Q
    ||||||||||||||||| |||| ||||||| ||||||||| |||||||    
T  15258845 aaggaaaatgttacatagacaccctttatttccatacacttttgtaca 15258892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 14055526 - 14055578
Alignment:
Q  176 acactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||| ||||||| |||||||  ||||| ||||||| ||||||||||||||||    
T  14055526 acactatttattctcatacacctttgtatacctcattcattaagaagagagaa 14055578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 32032906 - 32032838
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| ||||  |||| |  ||||||| ||||||||||||||  |||| ||||||||||    
T  32032906 ggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaa 32032838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 12495522 - 12495673
Alignment:
Q  12 aaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcattatttggat-- 109  Q
    ||||||||||||||||  | ||||||||||||||  |||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||||      
T  12495522 aaatccaacaagctcaaaatctctcaagcatatagaaaatcaaagtatttttttatccaaatccttcttaaatggtacccaaatttcattatttggataa 12495621  T
Q  110 --aaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
      |||| ||||||||||| | |||||||||| ||||||||||||||||||||    
T  12495622 aaaaaaaattccacacttctcaggatatctagcatatggacgccaaagaaaa 12495673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 12579608 - 12579769
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgt-atccaaatccttcttaaatggtacccaaatttca 99  Q
    ||||||| || ||||||||||||||||  | ||||||||||||||  |||| | || |||||| | ||||||||||||||||||||||||||||||||||    
T  12579608 tctataggcttaaatccaacaagctcaaaatctctcaagcatatagaaaatcaaagtattttttttatccaaatccttcttaaatggtacccaaatttca 12579707  T
Q  100 ttatttggataaa--acattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    |||||||||||||  | ||||||||||| |||||||||||| |||||||||| |||||||||    
T  12579708 ttatttggataaaagaaattccacacttcttaggatatctagcatatggacgtcaaagaaaa 12579769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 12519326 - 12519474
Alignment:
Q  12 aaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcattatttggat-- 109  Q
    ||||||||||| ||||  | ||||||||||||||  |||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||||      
T  12519326 aaatccaacaacctcaaaatctctcaagcatatagaaaatcaaagtatttttttatccaaatccttcttaaatggtacccaaatttcattatttggataa 12519425  T
Q  110 aaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    |||| ||||||||||| | |||||||||| |||||||||| |||||||||    
T  12519426 aaaaaattccacacttctcaggatatctagcatatggacg-caaagaaaa 12519474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 35523062 - 35522990
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  35523062 aaaaggaaaatgttacataaacaccatttattcccatacacccttgtacaccccatacattaggaagagagaa 35522990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 46374741 - 46374807
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagaga 225  Q
    |||||||||||||||| ||||  ||||||||||||||| |||||||||| ||||||||| |||||||    
T  46374741 aggaaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagaga 46374807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 26296826 - 26296758
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||| || ||||  | |||| |||||||| |||||||||||||||||||||||||||||||    
T  26296826 ggaaaatgttacgtagacaccatatatttccatacacccttgtacacctcatacattaagaagagagaa 26296758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 31736060 - 31735991
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||| ||| | ||  ||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  31736060 aggaaaatgttagatagataccttttattcccatacacccttgtacaccccatacattaggaagagagaa 31735991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 19330020 - 19329956
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  19330020 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaa 19329956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 41423864 - 41423796
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||||||| |||||||| |||||||  ||||||||| ||| || || ||||||||||    
T  41423864 ggaaaatgttacataaacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaa 41423796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 46033719 - 46033787
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| ||||  ||||||| ||||||| |||||||||| ||||||||| ||| ||||||    
T  46033719 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaatagagaa 46033787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 16374743 - 16374810
Alignment:
Q  161 gaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||| |||| |||||||| |||||||  ||||||||  ||||||||| ||||||||||    
T  16374743 gaaaatgttacatagacaccctttattctcatacacctttgtacactccatacattaggaagagagaa 16374810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 21234584 - 21234517
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagag 226  Q
    |||||||||||||||| ||||  ||||||| |||||||  ||||||||| ||||||||| ||||||||    
T  21234584 aggaaaatgttacatagacaccttttattctcatacaccattgtacaccccatacattaggaagagag 21234517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 3434730 - 3434666
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||  |||||||||| ||| ||||| ||||||||||    
T  3434730 aatgatacatagacaccctttattcccatacagccttgtacaccccatgcattaggaagagagaa 3434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 8080305 - 8080369
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||||| ||| || || ||||||||||    
T  8080305 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcaataggaagagagaa 8080369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 11044356 - 11044292
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||||||||||||  |||||||  ||||||||||||| ||||| ||||||||||    
T  11044356 aatgatacatagacactctttattttcatacacctttgtacacctcatgcattaggaagagagaa 11044292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 1766702 - 1766767
Alignment:
Q  163 aaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||| |||| |||| ||| |||| ||||||||| |||||||| | || ||||||||||    
T  1766702 aaatgttacatagacacactttgttctcatatactcttgtatacctcatatactacgaagagagaa 1766767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 22343543 - 22343475
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| ||||  |||| |  ||||||| ||||||||||||||  |||| ||||||||||    
T  22343543 ggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaa 22343475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 26354447 - 26354605
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||| |||    
T  26354447 tctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtaccgaaattgcat 26354546  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
     |||||||||||| |  ||||| |  |  | |||||||| |||||||||||||||||||    
T  26354547 catttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaa 26354605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 9815632 - 9815474
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    |||||||| || |||||||||||||| | |||||||||||||||||||||||||||||||    |||||||||| ||||||||||||||| |||   |||    
T  9815632 tctatagagtcgaatccaacaagctcggaaactctcaagcatataacaaatgagagcattagcttatccaaatctttcttaaatggtaccaaaagcgcat 9815533  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
     ||||||||||||||  || || || | || |||||||| |||||||||||||||||||    
T  9815532 catttggataaaacacaccgcagttatcagcatatctaaaatatggacgccaaagaaaa 9815474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 15409528 - 15409596
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||| ||||||||||    
T  15409528 ggaaaatgttacataaacaccctttattcgcatacacccttgtacaccccatacattaggaagagagaa 15409596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 36732876 - 36732928
Alignment:
Q  176 acactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  36732876 acaccctttattcccatacacccttgtacacctcatgcattaggaagagagaa 36732928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 31009171 - 31009102
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||| |||| |||||||| |||||||  ||||||||| ||| || || ||||||||||    
T  31009171 aggaaaatgttacatagacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaa 31009102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 2740452 - 2740388
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||| | ||| ||||| ||||||||||    
T  2740452 aatgatacatagacaccctttattcccatacacccttgtacatcccatgcattaggaagagagaa 2740388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 14831992 - 14831928
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||  |||||||||| ||| ||||| ||||||||||    
T  14831992 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaa 14831928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 18520806 - 18520870
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||  ||||||| |||||||||||||| ||||| ||||||||||    
T  18520806 aatgatacatagacaccctttattttcatacacccttgtacacctcatgcattaggaagagagaa 18520870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 31132512 - 31132448
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| ||||||||||| |||||||  ||||||| |||||||||||||| |||||  |||||||||    
T  31132512 aatgatacataaacaccctttattttcatacacccttgtacacctcatgcattagaaagagagaa 31132448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 3921181 - 3921251
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||| ||||  |||| |  ||||||| |||||||||| |||| |||| ||||||||||    
T  3921181 aaggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaa 3921251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 26720700 - 26720630
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||| ||| |||   ||||||| ||||||| || ||||||| ||||||||| ||||||||||    
T  26720700 aaggaaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaa 26720630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 26990449 - 26990379
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||| ||| |||   ||||||| ||||||| || ||||||| ||||||||| ||||||||||    
T  26990449 aaggaaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaa 26990379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 2252085 - 2252154
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||| ||||  |||| |  ||||||| |||||||||| |||| |||| ||||||||||    
T  2252085 aggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaa 2252154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 6259916 - 6259976
Alignment:
Q  157 aaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacatta 217  Q
    |||||||||||||||||| | |  ||||||||| |||||| |||||||| | |||||||||    
T  6259916 aaaggaaaatgttacatagatatcctttattcctatacacacttgtacatcccatacatta 6259976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 6679884 - 6679812
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||||||||||| |||   ||||||  ||||||| ||||||||||  |||||||| ||||||||||    
T  6679884 aaaaagaaaatgttacatagacatcatttattgtcatacacccttgtacaccctatacattaggaagagagaa 6679812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 40145585 - 40145521
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||| |||| || |||||||||||| | ||||| ||||||||||    
T  40145585 aatgatacatagacaccctttattctcatatacccttgtacacctcgtgcattaggaagagagaa 40145521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 1717818 - 1717657
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtat---ccaaatccttcttaaatggtacccaaattt 97  Q
    |||||||| |||||||||||||| ||||  ||||||||||||||||||||||| ||||||| |  ||   ||||||| ||||||||||||||| ||||||    
T  1717818 tctatagagtcaaatccaacaagttcagatactctcaagcatataacaaatgacagcatttgttcatccaccaaatctttcttaaatggtaccaaaattt 1717719  T
Q  98 cattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    ||| || ||||||||||||||||| ||| | || ||||||||||||||||||||||| ||||    
T  1717718 catcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaa 1717657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 38483571 - 38483413
Alignment:
Q  1 tctatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgtatccaaatccttcttaaatggtacccaaatttcat 100  Q
    ||||||| |||||||| ||||||||||  |||||||||||||||||||||||||||||||| | |||||||||  |||||||| |||||| ||| | |||    
T  38483571 tctatagtctcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaagtgcat 38483472  T
Q  101 tatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
     |||| |||||||||  |||||||| | |  |||||||| |||||||||| ||||||||    
T  38483471 cattttgataaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaa 38483413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 32813429 - 32813361
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  32813429 ggaaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagagagaa 32813361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 26440908 - 26440838
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||||||||  ||||||||| |||||| ||||||||   ||||||||| ||||||||||    
T  26440908 aaggaaaatgttacataaacatcctttattcctatacacccttgtacattccatacattacgaagagagaa 26440838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 49811447 - 49811513
Alignment:
Q  162 aaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||| |||| |||||||| ||||||| ||||| |||| ||||||||| ||||||||||    
T  49811447 aaaatgttacatagacaccctttattctcatacacccttgtgcaccacatacattaggaagagagaa 49811513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 27564657 - 27564721
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  27564657 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaa 27564721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 37649376 - 37649312
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  37649376 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaa 37649312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 45044474 - 45044546
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||| || |||   ||||||| ||||||| |||||||||| ||||||||| ||||||||||    
T  45044474 aaaaggaaaatgttacgtagacatcatttattctcatacacccttgtacaccccatacattaggaagagagaa 45044546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 48716204 - 48716268
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  48716204 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaa 48716268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 51898601 - 51898669
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||||||| ||||||| | |||||| |||||||||| ||| || || ||||||||||    
T  51898601 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaa 51898669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 2582093 - 2582029
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| ||||||||||| ||||||||  |||||| ||||||||||||||  |||| ||||||||||    
T  2582093 aatgatacataaacaccctttattctaatacacccttgtacacctcatgtattaggaagagagaa 2582029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 9474798 - 9474862
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||||||||||||| ||||||| |||||||| | ||| ||||| ||||||||||    
T  9474798 aatgatacatagacactctttattctcatacacccttgtacatcccatgcattaggaagagagaa 9474862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 26274607 - 26274543
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| ||||| || ||||| ||||| ||||||||||    
T  26274607 aatgatacatagacaccctttattcccatacacccttgtgcatctcatgcattaggaagagagaa 26274543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 38632255 - 38632307
Alignment:
Q  176 acactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  38632255 acaccctttattcccatacacccttgtacaccccatgcattaggaagagagaa 38632307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 47452242 - 47452306
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||||||||||||||||||||  |||||||||| ||| || || ||||||||||    
T  47452242 aatgatacatagacactctttattcccatacatccttgtacaccccatgcaataggaagagagaa 47452306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 47748626 - 47748556
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||| ||||  |||| |  |||||||||||||||||| |||  |||| ||||||||||    
T  47748626 aaggaaaatgttacatagacaccttttaattgcatacactcttgtacaccccatgtattaggaagagagaa 47748556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 6397323 - 6397417
Alignment:
Q  67 tccaaatccttcttaaatggtacccaaatttcattatttggataaaac--attccacacttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||   ||||||||||| | |||||||||||||||||||||||||||||||    
T  6397323 tccaaatccttcttaaatggtaccaagatttcgttatttggataaaaagaattccacacttctcaggatatctaacatatggacgccaaagaaaa 6397417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 6399029 - 6398918
Alignment:
Q  3 tatagactcaaatccaacaagctcagcaactctcaagcatataacaaatgagagcatttttgt-atccaaatccttcttaaatggtacccaaatttcatt 101  Q
    ||||||||||| |||||||||||||  ||||||||| ||||||  |||||| || |||||| | ||||||||||||||| | ||||||||||||| | ||    
T  6399029 tatagactcaattccaacaagctcataaactctcaaacatatagaaaatgaaagtattttttttatccaaatccttctttagtggtacccaaattccgtt 6398930  T
Q  102 atttggataaaa 113  Q
    ||||||||||||    
T  6398929 atttggataaaa 6398918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 29240071 - 29240000
Alignment:
Q  157 aaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| || || ||||||||||    
T  29240071 aaaggaaaatgttacatagacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaa 29240000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 31910376 - 31910306
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||||| | ||||||||| ||||||||||    
T  31910376 aaggaaaatgttacatagacaccatttattcccatacactcttgtacatcccatacattaggaagagagaa 31910306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 50052345 - 50052414
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||| |||| ||||||||||||||||  |||||||||| || || || ||||||||||    
T  50052345 aggaaaatgttacatagacaccctttattcccatacacctttgtacaccttatgcactaggaagagagaa 50052414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 50526088 - 50526157
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||||| ||||||| | |||||| |||||||||| ||| || || ||||||||||    
T  50526088 aggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaa 50526157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 24995029 - 24995093
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| ||||||||||||||||  ||||||||| ||| ||||||||||||||||    
T  24995029 aatgatacatagacaccctttattcccatacaccattgtacaccccatgcattaagaagagagaa 24995093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 41236525 - 41236461
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  41236525 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaa 41236461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 41824064 - 41823996
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| ||||  ||||||| |||||||  ||||||||||||| ||||| ||||||||||    
T  41824064 ggaaaatgttacatagacaccatttattctcatacacctttgtacacctcatgcattaggaagagagaa 41823996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 48182971 - 48183035
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||| ||||||| |||||||||| ||| ||||||||||||||||    
T  48182971 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaagaagagagaa 48183035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 11511402 - 11511448
Alignment:
Q  182 tttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||||    
T  11511402 tttatttccatacacccttgtacacctcatgcattaagaagagagaa 11511448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 47104723 - 47104658
Alignment:
Q  163 aaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||| || ||||| ||||||| | |||| ||| ||||||||||| ||||||||||||||||    
T  47104723 aaatgttacgtagacactttttattctcgtacattctagtacacctcatgcattaagaagagagaa 47104658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 56300086 - 56300151
Alignment:
Q  163 aaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||| || ||| ||||||||| |||||| ||||||||| |||||||||||  |||||||||    
T  56300086 aaatgttacgtagacattctttattctcatacaatcttgtacatctcatacattagaaagagagaa 56300151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 17983657 - 17983729
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||| |||||||||||| ||||| |||| |  ||||||| ||||||||||||||  |||| ||||||||||    
T  17983657 aaaagggaaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaa 17983729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 29589654 - 29589726
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||| ||||||| ||||  |||| |  ||||||||||||||||||||||  |||| ||||||||||    
T  29589654 aaaaggaaaatattacatagacaccttttaattgcatacactcttgtacacctcatgtattaggaagagagaa 29589726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 19670630 - 19670702
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||| ||||  |||| |  ||||||| |||||||||| |||  |||| ||||||||||    
T  19670630 aaaaggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaa 19670702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 23608413 - 23608349
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||  |||||||||||||||  | |||||||||||| ||||| ||||||||||    
T  23608413 aatgatacatagacatcctttattcccatacatccctgtacacctcatgcattaggaagagagaa 23608349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 54473455 - 54473519
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| ||||| ||||| |||||||||||||||| |||||||||  |||  |||| ||||||||||    
T  54473455 aatgatacatgaacaccctttattcccatacacccttgtacactccatgtattaggaagagagaa 54473519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 36169018 - 36168947
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaatag 231  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  36169018 ggaaaatgttacataaacaccctttattctcatacactcttgtacaccccatacattaggaagagagaatag 36168947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 40613819 - 40613891
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaatag 231  Q
    |||||||||||||||| |||| |||||||||||||||| |||||||||| ||||||||| ||||| |||||||    
T  40613819 aggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatacattatgaagaaagaatag 40613891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 2533306 - 2533237
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||| ||| |||| |||||||||||||||| |||||||||| ||||||||  ||||||||||    
T  2533306 aggaaaatgttatatatacaccctttattcccatacacccttgtacaccccatacattgggaagagagaa 2533237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 7465657 - 7465721
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  7465657 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaa 7465721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 17473198 - 17473134
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  17473198 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaa 17473134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 20700997 - 20700929
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| |||| |||||||||||||||| |||||||||| ||| || || ||||||||||    
T  20700997 ggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatgcactaggaagagagaa 20700929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 28863633 - 28863569
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  28863633 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaa 28863569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 32505570 - 32505634
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||    
T  32505570 aatgatacatagacactctttattctcatacacccttgtacaccccatgcattaagaagagagaa 32505634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 38273061 - 38273131
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaatag 231  Q
    ||||||| ||||||||||||  ||||||| |||||| ||||||||||| ||||||||| |||||||||||||    
T  38273061 ggaaaatattacataaacaccatttattctcataca-tcttgtacaccccatacattaggaagagagaatag 38273131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 42257376 - 42257307
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||| ||||||| |||| ||||||| | ||||||||||||||||| ||||||||| ||||| ||||    
T  42257376 aggaaaatattacatagacaccctttatttctatacactcttgtacaccccatacattaggaagaaagaa 42257307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 9058650 - 9058594
Alignment:
Q  172 ataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||| || ||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  9058650 ataaataccctttattcccatacactcttgtacaccccatgcattaggaagagagaa 9058594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 19930742 - 19930806
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||||  ||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  19930742 aatgatacatagacaccttttattcccatacacccttgtacacctcatgcattaggaagagagaa 19930806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 44152113 - 44152041
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||||||||||||||||  ||||||| ||||||| |||||| | ||||| ||||| ||||||||||    
T  44152113 aaaaagaaaatgttacataaacaccttttattcgcatacacccttgtatatctcatgcattaggaagagagaa 44152041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 2997401 - 2997473
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||| |||||||||||| ||||| |||| |  ||||||| ||||||||||||||  |||| ||||||||||    
T  2997401 aaaagggaaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaa 2997473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 13438521 - 13438457
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||  |||||||||| ||| ||||| ||||||||||    
T  13438521 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaa 13438457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 28381577 - 28381641
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||  |||||||||| |||| |||| ||||||||||    
T  28381577 aatgatacatagacaccctttattcccatacatccttgtacaccccatatattaggaagagagaa 28381641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 39191595 - 39191691
Alignment:
Q  65 tatccaaatccttcttaaatggtacccaaatttcattatttggataaaaca-ttccacac-ttgttaggatatctaacatatggacgccaaagaaaa 159  Q
    ||||||||||||||||||  |||||| || ||||||  ||||||||||||| ||| |||| || | || ||||  ||||||||||||||||||||||    
T  39191595 tatccaaatccttcttaagcggtaccaaagtttcatcctttggataaaacatttctacactttatcagcatattgaacatatggacgccaaagaaaa 39191691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 41758773 - 41758701
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||| ||||||||||||| ||||  ||||||| ||||||  |||||||||| |||| |||| ||||||||||    
T  41758773 aaaagaaaaatgttacatagacacattttattctcatacatccttgtacaccccatatattaggaagagagaa 41758701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 21301415 - 21301486
Alignment:
Q  157 aaaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| ||||||||| ||| |||| ||||||| |||||||||| |||||||||||| || || ||||| ||||    
T  21301415 aaagaaaaatgttagatacacaccctttatttccatacactcatgtacacctcatgcactaggaagaaagaa 21301486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 33436040 - 33436086
Alignment:
Q  182 tttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||| ||||||| |||||||||||||| ||||| ||||||||||    
T  33436040 tttattctcatacacccttgtacacctcatgcattaggaagagagaa 33436086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 3440163 - 3440114
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacc 207  Q
    ||||||||||||||||| |||| ||||||| ||||||||  |||||||||    
T  3440163 aaggaaaatgttacatagacaccctttatttccatacacctttgtacacc 3440114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 5574422 - 5574483
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagaga 225  Q
    |||| |||||| |||| |||||||||||||||| |||||||||  ||| ||||| |||||||    
T  5574422 aatgatacatagacaccctttattcccatacacccttgtacacgccatgcattaggaagaga 5574483  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 17823971 - 17823902
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||| |||  |||||||  ||||||| |||||||||| |||| |||  ||||||||||    
T  17823971 aggaaaatgttacatagacatcctttatttacatacacccttgtacaccccatatatttggaagagagaa 17823902  T

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Target: scaffold1268 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 848 - 915
Alignment:
Q  161 gaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| || || ||||||||||    
T  848 gaaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaa 915  T

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Target: scaffold1267 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 848 - 915
Alignment:
Q  161 gaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| || || ||||||||||    
T  848 gaaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaa 915  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 31976430 - 31976362
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| ||||  ||||||| ||||||| |||||||||| ||||||||| ||||||||||    
T  31976430 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaa 31976362  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 31110679 - 31110747
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| |||  ||||||| ||||||||  ||||||||| ||||||||| ||||||||||    
T  31110679 ggaaaatgttacatagacatcctttatttccatacacctttgtacaccccatacattaggaagagagaa 31110747  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 29858005 - 29857941
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||||  ||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  29858005 aatgatacatagacaccatttattcccatacacccttgtacaccccatgcattaggaagagagaa 29857941  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 32869856 - 32869792
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| |||| |||||||||||||||  |||||||||| ||| ||||| ||||||||||    
T  32869856 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaa 32869792  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 26466795 - 26466828
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcc 189  Q
    |||||||||||||||||||||||| |||||||||    
T  26466795 aaaaggaaaatgttacataaacaccctttattcc 26466828  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 30341277 - 30341346
Alignment:
Q  159 aggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||||||||||||||| ||||  |||| |  ||||||| |||||||||| |||| |||| ||||||||||    
T  30341277 aggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaa 30341346  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 15989960 - 15990028
Alignment:
Q  160 ggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||| ||||  |||| |  ||||||| |||||||||| |||| |||| ||||||||||    
T  15989960 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaa 15990028  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 22880580 - 22880644
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||||  ||||||||||||||| |||||||||| |||  |||| ||||||||||    
T  22880580 aatgatacatatacaccatttattcccatacacccttgtacaccccatgtattaggaagagagaa 22880644  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 8779 - 8849
Alignment:
Q  158 aaggaaaatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    ||||||||||||||||| ||||  |||||||  |||||| |||||||||| |||| |||| ||||||||||    
T  8779 aaggaaaatgttacatagacaccttttattcttatacacccttgtacaccccatatattaggaagagagaa 8849  T

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Target: scaffold0316 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 17289 - 17237
Alignment:
Q  156 aaaaggaaaatgttacataaacactctttattcccatacactcttgtacacct 208  Q
    ||||||||||||||||||| |||| ||||||| ||||||||  ||||||||||    
T  17289 aaaaggaaaatgttacatagacaccctttatttccatacacctttgtacacct 17237  T

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Target: scaffold0237 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 4207 - 4143
Alignment:
Q  164 aatgttacataaacactctttattcccatacactcttgtacacctcatacattaagaagagagaa 228  Q
    |||| |||||| ||||  ||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  4207 aatgatacatagacaccatttattcccatacacccttgtacaccccatgcattaggaagagagaa 4143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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