View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3615_low_3 (Length: 489)
Name: NF3615_low_3
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 245 - 476
Target Start/End: Complemental strand, 22198923 - 22198691
Alignment:
| Q |
245 |
gcataatctttttctcctcattaataattccttgattactaatagttaagcgtttatgagtgacgcgcttggatttattttatctgacagcagaactatc |
344 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22198923 |
gcataatctttttctcctcattagtaattccttgattactaatagttaagcgtttatgagtgacgtgcttggatttattttatctgacagcagaactatc |
22198824 |
T |
|
| Q |
345 |
tctttcaacactcacttcattcaacatccatcaaagtatacccactcctcacttccctgcatttaaagtttaaacatttcattattagcttat-ttttaa |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22198823 |
tctttcaacactcacttcattcaacatccatcaaagtatacccactcctcacttccctgcatttaaagtttaaacatttcattattagcttattttttaa |
22198724 |
T |
|
| Q |
444 |
agacaaaaccattatttaacaccctacttaatg |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22198723 |
agacaaaaccattatttaacaccctacttaatg |
22198691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 22199157 - 22198957
Alignment:
| Q |
11 |
cataggcacagacacaggtaccgtacacgacaatgacacatagacattgataaattttgagaaaatgaaatcattcagattagtataattataagtatca |
110 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
22199157 |
catagacacagacacaagtaccgtacacgacaatgacacatatacattgataaattttaagaaaatgaaatcattcaaattagtataattacaagtatca |
22199058 |
T |
|
| Q |
111 |
gtgttgaatacctaaacacacctttaatcagaagtatcagcgcaacagaggttggttgggtatgcatgtgatat-ggtcctt--tatgtgtggcatcaga |
207 |
Q |
| |
|
|| |||||||| ||| |||||||| |||||||||||| || ||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
22199057 |
gtattgaatacttaa--acacctttgatcagaagtatc-gcacaagagaggttggttgggtatgcatgtgatatgggtcctttatatgtgtggcatcaga |
22198961 |
T |
|
| Q |
208 |
aatc |
211 |
Q |
| |
|
|||| |
|
|
| T |
22198960 |
aatc |
22198957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University