View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3615_low_5 (Length: 458)

Name: NF3615_low_5
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3615_low_5
NF3615_low_5
[»] chr1 (3 HSPs)
chr1 (1-441)||(46190155-46190595)
chr1 (194-269)||(28539506-28539582)
chr1 (123-178)||(42294596-42294651)
[»] chr3 (4 HSPs)
chr3 (123-441)||(30841915-30842227)
chr3 (192-272)||(6778625-6778706)
chr3 (192-266)||(53630272-53630347)
chr3 (192-272)||(20513517-20513598)
[»] chr5 (3 HSPs)
chr5 (283-441)||(15105993-15106151)
chr5 (146-252)||(40018067-40018174)
chr5 (122-211)||(14410829-14410918)
[»] scaffold0001 (1 HSPs)
scaffold0001 (141-261)||(185393-185514)
[»] chr6 (2 HSPs)
chr6 (123-268)||(9929529-9929675)
chr6 (192-251)||(4410219-4410279)
[»] chr2 (4 HSPs)
chr2 (126-268)||(187225-187368)
chr2 (192-272)||(31116229-31116310)
chr2 (146-211)||(33710820-33710885)
chr2 (192-261)||(6401766-6401836)
[»] chr4 (3 HSPs)
chr4 (146-270)||(21283757-21283881)
chr4 (193-272)||(42704409-42704489)
chr4 (192-272)||(39466262-39466343)
[»] scaffold0408 (1 HSPs)
scaffold0408 (192-267)||(7854-7930)
[»] chr8 (5 HSPs)
chr8 (192-267)||(14097511-14097587)
chr8 (192-272)||(5076222-5076303)
chr8 (192-272)||(43532032-43532113)
chr8 (226-272)||(20669658-20669704)
chr8 (126-211)||(39870823-39870908)
[»] chr7 (2 HSPs)
chr7 (192-267)||(46273467-46273543)
chr7 (123-203)||(20188236-20188316)
[»] scaffold0010 (1 HSPs)
scaffold0010 (140-226)||(28555-28641)
[»] scaffold0015 (1 HSPs)
scaffold0015 (192-272)||(33552-33633)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 46190155 - 46190595
Alignment:
Q  1 gcagggatatttagtggactgaatctgagccagagatgtgttctaggctgttagttctggattgggcttgaattcaaagaccttcaaagtgataagccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46190155 gcagggatatttagtggactgaatctgagccagagatgtgtactaggctgttagttctggattgggcttgaattcaaagaccttcaaagtgataagccaa 46190254  T
Q  101 aaagcatagataattgttctttgaattctgctgtt-cactcaacataaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaa 199  Q
    ||||||| |||||||||||||||||||||||| || ||| ||||| ||||||||| |  | |||||||||| | ||||||| ||||||||| ||||| ||    
T  46190255 aaagcattgataattgttctttgaattctgctctttcacccaacacaaaacactc-caccctgcagtgttgtcaaaaatgcccctgcactagttaaccaa 46190353  T
Q  200 cgcaaatgtaaacctatgcgttagttactaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtgacttgcgtgaattaactcacgctggtag 299  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  46190354 cgcaagtgtaaatctatgcgttagttactaacgctgcgttacttaagtaacgcatgtgtaaagcgctgcgtgacttgcgtgagttaactcacgctggtag 46190453  T
Q  300 caatattaagatttgtctttttcactttttgttacgctgcactaaatttannnnnnnaattcaattccaattgttatcattttatgttgctgcaagttaa 399  Q
    |||||| ||||||||||||||||||||||||||| |||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  46190454 caatatcaagatttgtctttttcactttttgttaagctgcactcaatttatttttttaattcaattccaattgttatcattttatgttgctgcaagttaa 46190553  T
Q  400 tactcaatcccatttgatttcctttttgctgcacctgccatt 441  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46190554 tactcaatcccatttgatttcctttttgctgcacctgccatt 46190595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 28539506 - 28539582
Alignment:
Q  194 aactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcactgcg 269  Q
    ||||||||||| ||||||   |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||    
T  28539506 aactaacgcaagtgtaaattaatgcgttagttaactaacgttgcgctacttaagtaacgcatgtgtaaagcactgcg 28539582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 42294651 - 42294596
Alignment:
Q  123 gaattctgctgttcactcaacataaaacactcgcgtcttgcagtgttgccgaaaat 178  Q
    |||||||||| ||||| ||||| |||||||||||| | ||||||||||||||||||    
T  42294651 gaattctgctcttcacccaacacaaaacactcgcgccctgcagtgttgccgaaaat 42294596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 123 - 441
Target Start/End: Complemental strand, 30842227 - 30841915
Alignment:
Q  123 gaattctgctgttcactcaacataaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaacctatgcgtta 222  Q
    |||||||||  |||| ||| || |||||||| ||||  | |||||||| ||||||||||| ||| ||| |||||||||| || |||||||||||||||||    
T  30842227 gaattctgcacttcattcagcacaaaacacttgcgttctacagtgttgtcgaaaatgctcatgcgctagttaactaacgtaattgtaaacctatgcgtta 30842128  T
Q  223 gtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtgacttgcgtgaattaactcacgctggtagcaatattaagatttgtcttttt 321  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||| ||         || |||||||||||||||||| |||||||| ||||||    
T  30842127 gttaactaacgctgcgttacttaagtaacgtatatgtaaagcactgcgtgagtt---------aaatcacgctggtagcaatatcaagatttgccttttt 30842037  T
Q  322 cactttttgttacgctgcactaaatttannnnnnnaattcaattccaattgttatcattttatgttgctgcaagtta--atactcaatcccatttgattt 419  Q
    ||||||||||||||||||||| ||||||       |||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||    
T  30842036 cactttttgttacgctgcactcaatttatttttttaattcaattccaattgttattattttatgttgctgcaagttaatatactcaatcccatttgattt 30841937  T
Q  420 cctttttgctgcacctgccatt 441  Q
    ||||||||||||||||||||||    
T  30841936 cctttttgctgcacctgccatt 30841915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 6778706 - 6778625
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtga 272  Q
    ||||||||| ||| ||||||   ||| |||||||| |||||| || | ||||||||||||||||||||||||||||||||||    
T  6778706 ttaactaacacaagtgtaaattaatgtgttagttaactaacgttgtgctacttaagtaacgcatgtgtaaagcactgcgtga 6778625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 53630347 - 53630272
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcact 266  Q
    ||||||||||||| ||||||   |||||||||||| |||||  |||| |||||||||||||||||| |||| ||||    
T  53630347 ttaactaacgcaagtgtaaattaatgcgttagttaactaacattgcgctacttaagtaacgcatgtataaatcact 53630272  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 20513517 - 20513598
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtt-actaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtga 272  Q
    ||||||||||||| |||||| ||||||| ||||| |||||||||| || | |||||   | |||||||||| ||||||||||    
T  20513517 ttaactaacgcaagtgtaaaactatgcgatagttaactaacgctgtgtcaattaagatgcacatgtgtaaaacactgcgtga 20513598  T

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Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 283 - 441
Target Start/End: Original strand, 15105993 - 15106151
Alignment:
Q  283 ttaactcacgctggtagcaatattaagatttgtctttttcactttttgttacgctgcactaaatttannnnnnnaattcaattccaattgttatcatttt 382  Q
    |||||||| ||| |||||||||| |||||||| |||||||||||||||||| ||| |||| ||||||       |||| ||||||||||||||| |||||    
T  15105993 ttaactcatgctagtagcaatatcaagatttgcctttttcactttttgttatgctccactcaatttatttttttaattaaattccaattgttattatttt 15106092  T
Q  383 atgttgctgcaagttaatactcaatcccatttgatttcctttttgctgcacctgccatt 441  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  15106093 atgttgctgcaagttaatactcaatcctatttgatttcctttttgctccacctgccatt 15106151  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 252
Target Start/End: Original strand, 40018067 - 40018174
Alignment:
Q  146 aaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaacctatgcgttagtt-actaacgctgcgttactta 244  Q
    |||||||||||| | |||||||||| ||||||| | | |||  || ||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||    
T  40018067 aaaacactcgcgccctgcagtgttgtcgaaaatacccatgcgttagttaactaacgcaagtgtaaaactatgcgttagttaactaatgctgcgttactta 40018166  T
Q  245 agtaacgc 252  Q
    ||||||||    
T  40018167 agtaacgc 40018174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 14410918 - 14410829
Alignment:
Q  122 tgaattctgctgttcactcaacataaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaa 211  Q
    ||||||| ||| ||||| ||||| |||||||| ||| |||||||||||||||||||| | ||||| ||| ||||||||||| | ||||||    
T  14410918 tgaattccgctcttcacccaacacaaaacacttgcgccttgcagtgttgccgaaaatacccctgcgctagttaactaacgcgagtgtaaa 14410829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 185393 - 185514
Alignment:
Q  141 aacataaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaacctatgcgttagtt-actaacgctgcgtt 239  Q
    |||| |||||||||||| | | |||||||||||||||||| |||||  || ||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  185393 aacacaaaacactcgcgccctacagtgttgccgaaaatgcccctgcgttagttaactaacgcaagtgtaaaactatgcgttagttaactaacgctgcgtt 185492  T
Q  240 acttaagtaacgcatgtgtaaa 261  Q
    ||||||||||||||| ||||||    
T  185493 acttaagtaacgcatatgtaaa 185514  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 268
Target Start/End: Original strand, 9929529 - 9929675
Alignment:
Q  123 gaattctgctgttcactcaacataaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaacctatgcgtta 222  Q
    |||||||||| | ||| || || |||||||||||| | |||||||||||| ||||||| ||| |  || |||| |||||||| |||||| ||||| ||||    
T  9929529 gaattctgctctccacccagcacaaaacactcgcgccctgcagtgttgccaaaaatgcccctacgttagttaattaacgcaagtgtaaaactatgtgtta 9929628  T
Q  223 gtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcactgc 268  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  9929629 gttaactaacgctgcgttacttaagtaacgcatgtgtaaaacactgc 9929675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 4410279 - 4410219
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtt-actaacgctgcgttacttaagtaacg 251  Q
    ||||||||||||| |||||| |||||  |||||| |||||||||| || ||||||||||||    
T  4410279 ttaactaacgcaagtgtaaaactatgtattagttaactaacgctgtgtcacttaagtaacg 4410219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 268
Target Start/End: Complemental strand, 187368 - 187225
Alignment:
Q  126 ttctgctgttcactcaacataaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaacctatgcgttagtt 225  Q
    ||||||| | ||| ||||| ||||||| |||||| |||||||||  ||||||||| | |||  || ||||||||||||| |||||| |||||||||||||    
T  187368 ttctgctctccacccaacacaaaacacccgcgtcctgcagtgttatcgaaaatgcccatgcgttagttaactaacgcaagtgtaaaactatgcgttagtt 187269  T
Q  226 -actaacgctgcgttacttaagtaacgcatgtgtaaagcactgc 268  Q
     || |||||| |||||||||||||| ||||||||||| ||||||    
T  187268 aacaaacgctacgttacttaagtaatgcatgtgtaaaacactgc 187225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 31116229 - 31116310
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtga 272  Q
    ||||||||||||| ||||||  |||| |||||||| |||||| ||||| |||||||||||||| || |||| ||||| ||||    
T  31116229 ttaactaacgcaagtgtaaatttatgtgttagttaactaacgttgcgtcacttaagtaacgcaagtataaaacactgtgtga 31116310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 33710820 - 33710885
Alignment:
Q  146 aaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaa 211  Q
    |||||||||||| | |||||||||||| ||||| | ||||| ||| ||||||||||||| ||||||    
T  33710820 aaaacactcgcgccatgcagtgttgccaaaaatacccctgcgctagttaactaacgcaagtgtaaa 33710885  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 6401766 - 6401836
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttacttaagtaacgcatgtgtaaa 261  Q
    ||||||||||||| | ||||  |||| |||||||| ||||||| |||| |||||||||||||| |||||||    
T  6401766 ttaactaacgcaagtataaaattatgtgttagttaactaacgcagcgtgacttaagtaacgcaagtgtaaa 6401836  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 270
Target Start/End: Original strand, 21283757 - 21283881
Alignment:
Q  146 aaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttactta 244  Q
    |||||||||||| || | ||||||||||||||||  |||    || ||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||    
T  21283757 aaaacactcgcgcct-gtagtgttgccgaaaatgtccctatgttagttaactaacgcaagtgtaaaactatgtgttagttaactaacgctgcgttactta 21283855  T
Q  245 agtaacgcatgtgtaaagcactgcgt 270  Q
    ||||||||||||||||| ||||||||    
T  21283856 agtaacgcatgtgtaaaacactgcgt 21283881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 42704409 - 42704489
Alignment:
Q  193 taactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtga 272  Q
    |||||||||||| ||||||   ||| |||||||| |||||| |||| |||||||||||| ||||||||||||||| |||||    
T  42704409 taactaacgcaagtgtaaattaatgtgttagttaactaacgttgcgctacttaagtaacacatgtgtaaagcactacgtga 42704489  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 39466343 - 39466262
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtt-actaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtga 272  Q
    ||||||||||||| ||||||  |||||||||||| ||||| | || |  ||||||||| |||| ||||||| ||||||||||    
T  39466343 ttaactaacgcaagtgtaaatgtatgcgttagttaactaatgttgtgcaacttaagtatcgcaagtgtaaatcactgcgtga 39466262  T

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Target: scaffold0408 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 7930 - 7854
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcactg 267  Q
    ||||||||||||| ||||||  ||||| ||||||| |||||| |||| ||||||||||||||||||||||| |||||    
T  7930 ttaactaacgcaagtgtaaatttatgcattagttaactaacgatgcgctacttaagtaacgcatgtgtaaaacactg 7854  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 14097587 - 14097511
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcactg 267  Q
    ||||||||||||| ||||||  ||||| ||||||| |||||| |||| ||||||||||||||||||||||| |||||    
T  14097587 ttaactaacgcaagtgtaaatttatgcattagttaactaacgatgcgctacttaagtaacgcatgtgtaaaacactg 14097511  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 5076303 - 5076222
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtt-actaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtga 272  Q
    |||||||||||||||||||| ||||||| ||||| |||||| |||||| | ||||||  |||| ||||||| ||||||||||    
T  5076303 ttaactaacgcaaatgtaaaactatgcgctagttaactaacactgcgtcaattaagttgcgcaagtgtaaaacactgcgtga 5076222  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 43532032 - 43532113
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagttac-taacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtga 272  Q
    ||||||||||||  ||||||  |||| ||||||||| ||||| | || ||||||| ||| ||||||||||||||||||||||    
T  43532032 ttaactaacgcaggtgtaaatttatgtgttagttacctaacgttacgctacttaattaatgcatgtgtaaagcactgcgtga 43532113  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 20669658 - 20669704
Alignment:
Q  226 actaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtga 272  Q
    ||||||| |||  |||||||||||||||||||| |||||||||||||    
T  20669658 actaacgatgcactacttaagtaacgcatgtgtcaagcactgcgtga 20669704  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 39870823 - 39870908
Alignment:
Q  126 ttctgctgttcactcaacataaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaa 211  Q
    ||||||| ||||| || || |||||||| |||||||||||| ||||| |||||   | ||| ||| ||||||||||||| ||||||    
T  39870823 ttctgctcttcacccagcacaaaacacttgcgtcttgcagtcttgcccaaaatatccttgcgctagttaactaacgcaagtgtaaa 39870908  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 46273543 - 46273467
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtta-ctaacgctgcgttacttaagtaacgcatgtgtaaagcactg 267  Q
    ||||||||||||| ||||||   ||| |||||||| ||||||||||| || ||||||||| ||||||||||||||||    
T  46273543 ttaactaacgcaagtgtaaattaatgtgttagttaactaacgctgcgctaattaagtaacacatgtgtaaagcactg 46273467  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 20188236 - 20188316
Alignment:
Q  123 gaattctgctgttcactcaacataaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgca 203  Q
    |||||||||| | ||| || || |||||||||||||| ||||| |||||| ||||||| |||||  || |||||| |||||    
T  20188236 gaattctgctctccacccagcacaaaacactcgcgtcctgcagcgttgcccaaaatgcccctgcgttagttaactcacgca 20188316  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 28555 - 28641
Alignment:
Q  140 caacataaaacactcgcgtcttgcagtgttgccgaaaatgctcctgcactaattaactaacgcaaatgtaaacctatgcgttagtta 226  Q
    ||||| |||||||||||||| ||||| |||||   |||||| | |||  || ||||||||||||| ||||||  |||||||||||||    
T  28555 caacacaaaacactcgcgtcatgcagcgttgcaagaaatgcccatgcgttagttaactaacgcaagtgtaaaattatgcgttagtta 28641  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 33633 - 33552
Alignment:
Q  192 ttaactaacgcaaatgtaaacctatgcgttagtt-actaacgctgcgttacttaagtaacgcatgtgtaaagcactgcgtga 272  Q
    ||||||||||||| |||||| | ||||||||||| ||||||| ||||| |||| ||   |||||||| ||| ||||||||||    
T  33633 ttaactaacgcaagtgtaaaacaatgcgttagttaactaacgttgcgtcactttagatgcgcatgtgaaaaacactgcgtga 33552  T

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