View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3615_low_8 (Length: 395)
Name: NF3615_low_8
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 380
Target Start/End: Original strand, 4302328 - 4302701
Alignment:
| Q |
7 |
ggagcagagagaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcct |
106 |
Q |
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| T |
4302328 |
ggagcagaaagaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcct |
4302427 |
T |
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| Q |
107 |
gcctatgagttctaattgaagagtaggattaatttatcaaagtttcagttataaacaaaaaactaaatggagtccatggtcatcaatcatattaacattt |
206 |
Q |
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| T |
4302428 |
gcctatgagttctaattgaagagtaggattaatttatcaaagtttcagttataaacaaaaaactaaatggagtccatggtcatcaatcatattaacattt |
4302527 |
T |
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| Q |
207 |
aatttccttgatgggccattgacttttagactctttaatttggcaaccaattgccacttgctataaattttcaccatatttaattttgaacaattggcat |
306 |
Q |
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| T |
4302528 |
aatttccttgatgggccattgacttttagactctttaatttggcaaccaattgccacttgctataaattttcaccatatttaattttgaacaattggcat |
4302627 |
T |
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| Q |
307 |
tattgattagaacggatagaatacgaaatcaagacgttgcttgagggtgggggaatgcttttatacgaagaaac |
380 |
Q |
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| T |
4302628 |
tattgattagaacggatagaatatgaaatcaagacgttgcttgagggtgggggaatgcttttatacgaagaaac |
4302701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 55810722 - 55810568
Alignment:
| Q |
9 |
agcagagagaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgc |
108 |
Q |
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| T |
55810722 |
agcagaaagaggtgataagcaaacatgactagcaactcacaaaggaccaaaatcaaatccagacactccttgtggaacttcattttcagtttcttccttc |
55810623 |
T |
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| Q |
109 |
ctatgagttctaattgaagagtaggattaatttatcaaagtttcagttataaacaa |
164 |
Q |
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| T |
55810622 |
cta-gagtgctaattgaggagtatgattaatttcacaaggtttcagttataaacaa |
55810568 |
T |
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