View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3615_low_9 (Length: 360)
Name: NF3615_low_9
Description: NF3615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3615_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 39341390 - 39341597
Alignment:
| Q |
11 |
cacagagaaaccttggagtttgatgtttgacccttaattctcgtaataatgaatgaagcaatagaatttctgcattatagcatgttctaaattcctaatc |
110 |
Q |
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| T |
39341390 |
cacagagaaaccttggagtttgatgtttgacccttaattctcgtaataatgaatgaagcaatagaatttctgcattatagcatgttctaaattcctaatc |
39341489 |
T |
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| Q |
111 |
tctgctttaacacttgaccttgcaactattgtctaatacttttaaaccttggtaaaaatcatcaagtaggccttatgatcaaattttccagcaatgacat |
210 |
Q |
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| T |
39341490 |
tctgctttaacacttgaccttgcaactattgtctaatacttttaaaccttggtaaaaatcatcaagtaggccttatgatcaaattttccagcaatgacat |
39341589 |
T |
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| Q |
211 |
aggcacat |
218 |
Q |
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|||||||| |
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| T |
39341590 |
aggcacat |
39341597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 39356211 - 39356412
Alignment:
| Q |
11 |
cacagagaaaccttggagtttgatgtttgacccttaattctcgtaataatgaatgaagcaatagaatttctgcattatagcatgttctaaattcctaatc |
110 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |||||||| |
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| T |
39356211 |
cacagagaaac-ttggagtttgatgtttgattcttaattctcgtaataatgaatgaagccataaaatttctgcagtatagcatgttctaaactcctaatc |
39356309 |
T |
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| Q |
111 |
tctgctttaacacttgaccttgcaactattgtctaatacttttaaaccttggtaaaaatcatcaagtaggccttatgatcaaattttccagcaatgacat |
210 |
Q |
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|||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||| || |
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| T |
39356310 |
tctgctttaacacttgaccttgcaaccaatgtctgatacttttaaaccttggtaagaatcatcaagtaggccttatggtcaaattttacagaaatgaaat |
39356409 |
T |
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| Q |
211 |
agg |
213 |
Q |
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||| |
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| T |
39356410 |
agg |
39356412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 39341653 - 39341724
Alignment:
| Q |
274 |
ggttagtatacattttgctcttgtcaaacagtgttggaagccaaacagtggaaggttttctgagaaattact |
345 |
Q |
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| T |
39341653 |
ggttagtatacattttgctcttgtcaaacagtgttggaagccaaactgtggaaggttttctgagaaattact |
39341724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 39369025 - 39369138
Alignment:
| Q |
22 |
cttggagtttgatgtttgacccttaattctcgtaataatgaatgaagcaatagaatttctgcattat-agcatgttctaaattcctaatctctgctttaa |
120 |
Q |
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| T |
39369025 |
cttggagtttgatgttttccccttaattctcacaataatgactgaagccttagaatttctgcagcataagcatgttctgaactctta--ctctacttcaa |
39369122 |
T |
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| Q |
121 |
cacttgaccttgcaac |
136 |
Q |
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| T |
39369123 |
caattgaccttgcaac |
39369138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 345
Target Start/End: Original strand, 39368471 - 39368514
Alignment:
| Q |
302 |
cagtgttggaagccaaacagtggaaggttttctgagaaattact |
345 |
Q |
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||||| |||||| ||||||||||||| ||||||||||||||||| |
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| T |
39368471 |
cagtgatggaagacaaacagtggaagattttctgagaaattact |
39368514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 345
Target Start/End: Complemental strand, 39535822 - 39535779
Alignment:
| Q |
302 |
cagtgttggaagccaaacagtggaaggttttctgagaaattact |
345 |
Q |
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||||| |||||| ||||||||||||| ||||||||||||||||| |
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| T |
39535822 |
cagtgatggaagacaaacagtggaagattttctgagaaattact |
39535779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 39527348 - 39527306
Alignment:
| Q |
303 |
agtgttggaagccaaacagtggaaggttttctgagaaattact |
345 |
Q |
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|||| |||||| ||||||||||||| ||||||||||||||||| |
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| T |
39527348 |
agtgatggaagacaaacagtggaagattttctgagaaattact |
39527306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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