View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3616_high_5 (Length: 250)

Name: NF3616_high_5
Description: NF3616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3616_high_5
NF3616_high_5
[»] chr6 (4 HSPs)
chr6 (16-120)||(1953776-1953880)
chr6 (20-110)||(1939908-1939998)
chr6 (20-105)||(1924487-1924572)
chr6 (151-222)||(9852104-9852175)
[»] chr3 (4 HSPs)
chr3 (145-248)||(38511214-38511318)
chr3 (142-202)||(46835555-46835615)
chr3 (146-221)||(45640689-45640764)
chr3 (151-221)||(51646886-51646956)
[»] chr1 (2 HSPs)
chr1 (146-206)||(44621419-44621479)
chr1 (150-222)||(47932414-47932486)
[»] chr5 (1 HSPs)
chr5 (147-206)||(34509399-34509458)
[»] chr7 (2 HSPs)
chr7 (146-206)||(26000017-26000077)
chr7 (148-223)||(44111380-44111456)
[»] chr2 (2 HSPs)
chr2 (151-221)||(24538238-24538308)
chr2 (154-221)||(32277045-32277112)
[»] chr8 (1 HSPs)
chr8 (142-221)||(30850194-30850273)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 1953776 - 1953880
Alignment:
Q  16 atcattcaagttcttgaagacaaaggaaattccaacgggtttctatgagatcaagactggacatgcaaacattcgtacaccttggtggtaagaatatttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1953776 atcattcaagttcttgaagacaaaggaaattccaacgggtttttatgagatcaagactggacatgcaaacattcgtacaccttggtggtaagaatatttt 1953875  T
Q  116 ccata 120  Q
    |||||    
T  1953876 ccata 1953880  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 1939908 - 1939998
Alignment:
Q  20 ttcaagttcttgaagacaaaggaaattccaacgggtttctatgagatcaagactggacatgcaaacattcgtacaccttggtggtaagaat 110  Q
    ||||||||||| |||||||||||||| ||||| || ||||||||| || |||| |||||||||||||| ||||||||||||||||||||||    
T  1939908 ttcaagttcttcaagacaaaggaaatcccaactggcttctatgaggtccagaccggacatgcaaacatccgtacaccttggtggtaagaat 1939998  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 1924487 - 1924572
Alignment:
Q  20 ttcaagttcttgaagacaaaggaaattccaacgggtttctatgagatcaagactggacatgcaaacattcgtacaccttggtggta 105  Q
    |||||||| ||||||||||||||||| || || || ||| |||| ||||||||||||||| ||||||| || ||||||||||||||    
T  1924487 ttcaagtttttgaagacaaaggaaatgcccactgggttcgatgatatcaagactggacatccaaacatacgcacaccttggtggta 1924572  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 9852104 - 9852175
Alignment:
Q  151 tacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaat 222  Q
    ||||||||| ||||| ||||||||||  ||| ||| |||| |||||||||||||||||||||||||||||||    
T  9852104 tacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaatcctaatctttttggctccaat 9852175  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 38511318 - 38511214
Alignment:
Q  145 atatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaat-ctttttggctccaatgtatggtggcctttgatttca 243  Q
    ||||| ||||||||| ||||| ||||||||||||||| ||||| ||  ||| |||||||||||  |||| ||| ||||||| |||||||| |||||||||    
T  38511318 atatcatacttatttttaatatgaataacacttttaacaaaatttgcaaactctaatcctaatgattttgggcgccaatgtttggtggccgttgatttca 38511219  T
Q  244 atcta 248  Q
    |||||    
T  38511218 atcta 38511214  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 46835615 - 46835555
Alignment:
Q  142 atcatatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatc 202  Q
    |||||||| ||||||||| ||||| |||||||| | |||| ||| ||||||||||||||||    
T  46835615 atcatatcatacttatttctaatatgaataacaatattaacaaattgtgtcaaccctaatc 46835555  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 45640764 - 45640689
Alignment:
Q  146 tatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 221  Q
    ||||||| |||| | |||||  ||||||| | |||| ||| |||||||||||||||||||||  ||||||||||||    
T  45640764 tatcttatttatctctaatatcaataacaatgttaacaaattgtgtcaaccctaatcctaatggttttggctccaa 45640689  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 51646886 - 51646956
Alignment:
Q  151 tacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 221  Q
    ||||||||| ||||| |||||||| | |||| ||  |||||||||||||||| | || |||||||||||||    
T  51646886 tacttatttctaatatgaataacattgttaacaatttgtgtcaaccctaatcttgatgtttttggctccaa 51646956  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 44621479 - 44621419
Alignment:
Q  146 tatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaa 206  Q
    |||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||    
T  44621479 tatcttacttatttctaatactaataacaatgttaagaaaatgtgtcaaccctaatcctaa 44621419  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 47932414 - 47932486
Alignment:
Q  150 ttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaat 222  Q
    ||||||| || |||||| ||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||    
T  47932414 ttacttaattctaatactaataacaatgttaagaaattgtgtcaactctaatcctaatctttttggctccaat 47932486  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 34509458 - 34509399
Alignment:
Q  147 atcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaa 206  Q
    ||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||    
T  34509458 atcttacttatttctaatactaataacaatgttaagaaaatgtgtcaaccctaatcctaa 34509399  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 26000017 - 26000077
Alignment:
Q  146 tatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaa 206  Q
    |||||||||||||| |||||| ||||||| | ||||||||||||| |||||||||||||||    
T  26000017 tatcttacttatttctaatactaataacaatgttaagaaaatgtgacaaccctaatcctaa 26000077  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 44111380 - 44111456
Alignment:
Q  148 tcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatccta-atctttttggctccaatg 223  Q
    ||||||||||||  ||||| ||||||| | |||||||||  ||||||||||||| ||| |||| |||||| ||||||    
T  44111380 tcttacttatttccaatactaataacaatgttaagaaaaattgtcaaccctaattctacatctctttggcaccaatg 44111456  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 24538238 - 24538308
Alignment:
Q  151 tacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 221  Q
    ||||||||| ||||| |||||||| | |||| ||| |||||||||||||||||||||  ||||||||||||    
T  24538238 tacttatttctaatatgaataacaatgttaacaaattgtgtcaaccctaatcctaatagttttggctccaa 24538308  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 32277045 - 32277112
Alignment:
Q  154 ttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 221  Q
    |||||| |||||| ||||||| | |||| |||||||||||||||||||||||||  ||||||| ||||    
T  32277045 ttatttctaatactaataacaatgttaaaaaaatgtgtcaaccctaatcctaattattttggcgccaa 32277112  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 30850273 - 30850194
Alignment:
Q  142 atcatatcttacttatttataatacgaataacacttttaagaaaatgtgtcaaccctaatcctaatctttttggctccaa 221  Q
    |||||||| ||||||||| ||||| ||||||||||  ||| ||| |||| ||||||||||| ||||  ||||||||||||    
T  30850273 atcatatcatacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaatcttaatgattttggctccaa 30850194  T

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