View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3616_high_6 (Length: 240)
Name: NF3616_high_6
Description: NF3616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3616_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1940098 - 1940317
Alignment:
| Q |
1 |
atgataatagggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaaggaagg |
100 |
Q |
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| T |
1940098 |
atgataatagggatggaagtgtgatatatggaagcaatcaagaagttttggacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaaggaagg |
1940197 |
T |
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| Q |
101 |
tgaacttcttcataatgaaaatggaacagcaatttcaggtgatgttcgcaatagttgggctggtgtctcaactttgcaggctctttttattcaagaacac |
200 |
Q |
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| T |
1940198 |
tgaacttcttcataatgaagatggaacagcaatttcaggtgacattcgtaatagttgggctggtgtcacaactttgcagaccctttttgttctagaacac |
1940297 |
T |
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| Q |
201 |
aatgctgtttgtgatgctct |
220 |
Q |
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| T |
1940298 |
aatgctgtgtgtgattctct |
1940317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1954559 - 1954779
Alignment:
| Q |
1 |
atgataatagggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaaggaagg |
100 |
Q |
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| T |
1954559 |
atgataatagggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgagaactttcaaagatgggaagttaaaaatattagacgatgg |
1954658 |
T |
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| Q |
101 |
tgaacttcttcataatgaaaatggaacagcaatttcaggtgatgttcgcaatagttgggctggtgtctcaactttgcaggctctttttattcaagaacac |
200 |
Q |
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| T |
1954659 |
tacccttaagcaaaatgaaaatggagtagcaatttcaggtgacgttcgcaatagttgggctggtgtctcaactttgcaggctctctttattcaagaacac |
1954758 |
T |
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| Q |
201 |
aatgctgtttgtgatgctctc |
221 |
Q |
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| T |
1954759 |
aatgctttttgtgatgctctc |
1954779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 1925776 - 1925991
Alignment:
| Q |
9 |
agggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaaggaagg---tgaac |
105 |
Q |
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| T |
1925776 |
agggatggaagtgtgatatatggaagcaatgatgaaattttgacccaagtgaggacttcccaagatgggaagttaaaaatatcaaaggaaggaaatcatc |
1925875 |
T |
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| Q |
106 |
ttcttcataatgaaaatggaacagcaatttcaggtgatgttcgcaatagttgggctggtgtctcaactttgcaggctctttttattcaagaacacaatgc |
205 |
Q |
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| T |
1925876 |
ttctacaaaacgaagatggagttgcaatttcaggtgatgttcgcaatagttgggctggtgtttcaactttgcaagcccttttcattcaagaacacaatgc |
1925975 |
T |
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| Q |
206 |
tgtttgtgatgctctc |
221 |
Q |
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|||||||||||||||| |
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| T |
1925976 |
tgtttgtgatgctctc |
1925991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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