View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3616_low_1 (Length: 655)

Name: NF3616_low_1
Description: NF3616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3616_low_1
NF3616_low_1
[»] chr4 (1 HSPs)
chr4 (23-648)||(53675957-53676589)


Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 23 - 648
Target Start/End: Complemental strand, 53676589 - 53675957
Alignment:
Q  23 agccgaatagaagcaattaggacacgatctttataggtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcacttgtaatt 122  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53676589 agccgaataatagcaattaggacacgatctttatatgtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcacttgtaatt 53676490  T
Q  123 tgtaaactttatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtcacacttaaccctctttgtagaagctaagaaacacgca 222  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  53676489 tgtaaactatatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtgacacttaaacctctttgtagaagctaagaaacacgca 53676390  T
Q  223 gtgaagagaaaataaataaaatgttaaaagataaactttaaaattggacaataatattatttctacataacgccttcacagtccccttgcacaaaataaa 322  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53676389 gtcaagagaaaataaataaaatgttaaaagataaactttaaaattggacaataatattatttctacataacgccttcacagtccccttgcacaaaataaa 53676290  T
Q  323 acctctaatgctgttgtgtatgtcaaaaataatgaaggctatgtggcaaccttgcaaggtttggtagttagagacagaaatattttccactttatcatcc 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  53676289 acctctaatgctgttgtgtatgtcaaaaataatgaaggctatgtggcaaccttgcaaggtttg--atttagagacagaaatattttccactttatcatcc 53676192  T
Q  423 atcagaaaaagagaaaacagttagtgtcctctcaaagtttcattgatgataaagtgatgactgtaactannnnnnncaagaattgcaaatagtccaacaa 522  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||    
T  53676191 atcagaaaaagagaaaacagttagtgtcctctcaaagtttcattgatgataaagtgatgaatgtaactatttttttcaagaattgcaaatagtccaacaa 53676092  T
Q  523 gctttcctaccaactggaagt---------aaaactaaaaataataaaggcacaaaattttgtaaaaaggaggttcatttttggcttatataacaagaca 613  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53676091 gctttcctaccaactggaagtaaaaaaaaaaaaactaaaaataataaaggcacaaaattttgtaaaaaggaggttcatttttggcttatataacaagaca 53675992  T
Q  614 agataaaatgatatacatgcccaccacctttgctt 648  Q
    |||||||||||||||||||||||||||||||||||    
T  53675991 agataaaatgatatacatgcccaccacctttgctt 53675957  T

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