View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3616_low_2 (Length: 545)
Name: NF3616_low_2
Description: NF3616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3616_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 54 - 451
Target Start/End: Original strand, 24566246 - 24566643
Alignment:
| Q |
54 |
aacccaatgatcagtatagtcttctacactcgtgatacatgcttgataagaaagactattgcatgaaagaaacatttaatcataaagaaacttttttagt |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566246 |
aacccaatgatcagtatagtcttctacactcgtgatacatgcttgataagaaagactattgcatgaaagaaacatttaatcataaagaaacttttttagt |
24566345 |
T |
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| Q |
154 |
acaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccatccaatccacatattatgcagaagacgatatggaatgtaggtgctc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566346 |
acaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccatccaatccacatattatgcagaagacgatatggaatgtaggtgctc |
24566445 |
T |
|
| Q |
254 |
gagtgggttaattgaacatgtcaattatattgattataaacacacagaaaaacaacttgataaaattcagtttcatcaattcaagtgatcgtaatttcat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24566446 |
gagtgggttaattgaacatgtcaattatattgattataaacacacaggaaaacaacttgataaaattcagtttcatcaattcaagtgatcataatttcat |
24566545 |
T |
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| Q |
354 |
aaatcgtatcttgtccatatctgttacccgtcaattgtcaaatcaaatatgttcacgtgatggatacttccataagataaagaaggtaacttgttatg |
451 |
Q |
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| T |
24566546 |
aaatcgtatcttgtccatatctgttacccgtcaattgtcaaatcaaatatgttcacgtgatggatacttccataagataaagaaggtaacttgttatg |
24566643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 45532758 - 45532545
Alignment:
| Q |
16 |
tcaatttttctattttgaattataagtggtcatattataacccaatgatcagtatagtcttctacactcgtgatacatgcttgataagaaagactat--t |
113 |
Q |
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|||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||| || | | |
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| T |
45532758 |
tcaaattttttattttgaattataattggtcatattataacccaatgatgagtat----ttctacattcgtgatacatgcttgatatgaaagtctctaat |
45532663 |
T |
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| Q |
114 |
gcatgaaagaaacatttaatcataaagaaacttttttagtacaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccatccaat |
213 |
Q |
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| T |
45532662 |
acatgaaagaagcatttcatcacagagaaacttttttagttcaattgtttacctttctcattctcaaattataaataattttttaaaatacatatccaat |
45532563 |
T |
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| Q |
214 |
ccacatattatgcagaag |
231 |
Q |
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| T |
45532562 |
ccacatattatgcagaag |
45532545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 109 - 293
Target Start/End: Complemental strand, 44335431 - 44335247
Alignment:
| Q |
109 |
ctattgcatgaaagaaacatttaatcataaagaaacttttttagtacaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccat |
208 |
Q |
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|||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| || || |||||||||||| ||| |
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| T |
44335431 |
ctattgcatgaaagaagcatttaatcacaaagaagcttttttagtacaattgtttatctttcttattctcaaactgtaagtagtttttgcaaatattcat |
44335332 |
T |
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| Q |
209 |
ccaatccacatattatgcagaagacgatatggaatgtaggtgctcgagtgggttaattgaacatgtcaattatattgattataaa |
293 |
Q |
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| T |
44335331 |
ctgattcacatatcatgcataagacatcataaaatgtaggtgctggagtgatttaattgaatatattatttatattgattttaaa |
44335247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 109 - 293
Target Start/End: Original strand, 44339536 - 44339720
Alignment:
| Q |
109 |
ctattgcatgaaagaaacatttaatcataaagaaacttttttagtacaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccat |
208 |
Q |
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| T |
44339536 |
ctattgcatgaaagaagcatttaatcacaaagaagcttttttagtacaattgtttatctttcttattctcaaactgtaagtagtttttgcaaatatccat |
44339635 |
T |
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| Q |
209 |
ccaatccacatattatgcagaagacgatatggaatgtaggtgctcgagtgggttaattgaacatgtcaattatattgattataaa |
293 |
Q |
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| T |
44339636 |
ctgattcacatatcatgtagaagacagcataaaatgttggtgctggagtgatttaattgaatatattatttatattgattttaaa |
44339720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 45532540 - 45532459
Alignment:
| Q |
262 |
taattgaacatgtcaattatattgattataaa-cacacagaaaaacaacttgataaaattcagtttcatcaattcaagtgat |
342 |
Q |
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||||||||||||||||||| ||||||| |||| ||||||| |||| ||||||||||||||||||||||| |||||||||||| |
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| T |
45532540 |
taattgaacatgtcaattagattgattttaaaacacacaggaaaaaaacttgataaaattcagtttcataaattcaagtgat |
45532459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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