View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3616_low_3 (Length: 445)
Name: NF3616_low_3
Description: NF3616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3616_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 34957662 - 34958075
Alignment:
| Q |
17 |
aaatattggtctgaacagacgcaagaccgtgcggtattttggcacggccgtgtgataacttactataattctggggaaataatgcctaatttcatgcgca |
116 |
Q |
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| T |
34957662 |
aaatattggtctggacagacgcacgaccgtgcggtattttggcacggccgtgcgataacttactgtaattctggggaaataatgcctaatttcatgcgca |
34957761 |
T |
|
| Q |
117 |
cgttcgtgcttatgaatggcacggtcaaatcaaatgcttaaagattgtgtgtcaccaaaccatattacattagtgtgttctctgtacatgcaatcacgct |
216 |
Q |
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| T |
34957762 |
cggtcgtgcttatgaatggcacggtcaaatcaaatgcttaaagattgcgtgtcaccaaaccatattacattagtgtgttctctgtacatgcaatcacgct |
34957861 |
T |
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| Q |
217 |
agtttgaaacaatggaggaaaagtttggaatcaaaccaacacaagagcactatgcttgcatgattgatatccttggaaatcagggaaactaaatgaagcg |
316 |
Q |
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| T |
34957862 |
agtttgaaacaatggaggaaaagtttggaatcaaaccaacacaagagcactatgcttgcatgattgatatccttggaaattagggaaactaaatgaagcg |
34957961 |
T |
|
| Q |
317 |
gtggaacttatgaattccattccatttgaagctgatggatccgtttggggggcgcttcttggtgctgcaagaatccacgaaaatgttgaacttggtgaaa |
416 |
Q |
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| T |
34957962 |
gtggaacttatgaattccattccatttgaagctgatggatccgtttgaggggcgcttcttggtgctgcaagaatccacaaaaatgttgaacttggtgaaa |
34958061 |
T |
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| Q |
417 |
cagtgctttttcat |
430 |
Q |
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| T |
34958062 |
cagtgctttttcat |
34958075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 219 - 414
Target Start/End: Complemental strand, 50131772 - 50131576
Alignment:
| Q |
219 |
tttgaaacaatggaggaaaagtttggaatcaaaccaacacaagagcactatgcttgcatgattgatatccttggaa-atcagggaaactaaatgaagcgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| | |
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| T |
50131772 |
tttgaaacaatggaggaaaagtttggaatcaaaccaacacaagagcaccatgcttgcatgattgatctccttggaagatcagggaaactaaatgaagcag |
50131673 |
T |
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| Q |
318 |
tggaacttatgaattccattccatttgaagctgatggatccgtttggggggcgcttcttggtgctgcaagaatccacgaaaatgttgaacttggtga |
414 |
Q |
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| T |
50131672 |
tggagcttgtgaattccattccatttgaagccgatggatccgtttggggggcgcttcttggtgctgcaagaatccacaaaaatgttgaacttggtga |
50131576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 50131874 - 50131794
Alignment:
| Q |
144 |
aatcaaatgcttaaagattgtgtgtcaccaaaccatattacattagt--gtgttctctgtacatgcaatcacgctagtttg |
222 |
Q |
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| T |
50131874 |
aatcaaatgcttaaagattgtgtgtcaccaaaccatattacattagtcagtgttctctgtgcatgtaatcatgctggtttg |
50131794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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