View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3616_low_4 (Length: 404)
Name: NF3616_low_4
Description: NF3616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3616_low_4 |
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| [»] scaffold0331 (1 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: scaffold0331 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 3349 - 2972
Alignment:
| Q |
11 |
cacagataaaacaccagtacagcaacagcttcacccaaactcaatttaaattggcgcaatgttgtcgtcgtcctctacaacatgaatcttacccttatca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3349 |
cacagataaaacaccagtacagcaacagcttcacccaaactcaatttaaattggtgcaatgttgtcgtcgtcctctacaacatgaaccttacccttatca |
3250 |
T |
|
| Q |
111 |
ttgtcttgcccagacatccctggtatgattatacaataaacaaaaattaatataataggaatgactagagagtctcatgtcaatacataattaaatttgc |
210 |
Q |
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| T |
3249 |
ttgtcttgcccagacatccctggtatgattatacaataaacaaaaattaatataataggaatgactagagagtctcatgtcaatacataattaaatttgc |
3150 |
T |
|
| Q |
211 |
aggacacaattgacatagtaatattagcctataagatatatatatgtgtcaagtaatgactaagaaaatagtaggaacataatatgtattatggaggaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3149 |
aggacacaattgacatagtaatattagcctataagatatatatatgtgtcaagtaatgactaagaaaatagtaggaacataatatgtattatggaggaaa |
3050 |
T |
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| Q |
311 |
ctttcaaagtatggatatgagcatcaatcaaacatggctgaagaagcggaggtaaaaagataataaccttgaatatat |
388 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3049 |
ctttcaaagtacggatatgagcatcaatcaaacatggctgaagaagcggaggtaaaaagataataaccttgaatatat |
2972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 17731346 - 17731275
Alignment:
| Q |
84 |
tctacaacatgaatcttacccttatcattgtcttgcccagacatccctggtatgattatacaataaacaaaa |
155 |
Q |
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| T |
17731346 |
tctacaacatgagtcttacccttatccttgtctcgcccagacatccttgtcataattatacaataaacaaaa |
17731275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 23832544 - 23832601
Alignment:
| Q |
98 |
cttacccttatcattgtcttgcccagacatccctggtatgattatacaataaacaaaa |
155 |
Q |
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| T |
23832544 |
cttacccttatccttgtctcgcccagacatccctgtcataattatacaataaacaaaa |
23832601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 24641241 - 24641170
Alignment:
| Q |
84 |
tctacaacatgaatcttacccttatcattgtcttgcccagacatccctggtatgattatacaataaacaaaa |
155 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||| ||||||| ||||||| || |||||||||||||||||| |
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| T |
24641241 |
tctacaacatgagccttacccctatccttgtctcgcccagatatccctgtcataattatacaataaacaaaa |
24641170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 26080185 - 26080233
Alignment:
| Q |
84 |
tctacaacatgaatcttacccttatcattgtcttgcccagacatccctg |
132 |
Q |
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| T |
26080185 |
tctacaacatgagccttacccttatccttgtctcgtccagacatccctg |
26080233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 23612105 - 23612034
Alignment:
| Q |
84 |
tctacaacatgaatcttacccttatcattgtcttgcccagacatccctggtatgattatacaataaacaaaa |
155 |
Q |
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|||||| ||||| |||||||||||| |||||| | ||||||||||||| || |||||||||||||||||| |
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| T |
23612105 |
tctacagcatgagccttacccttatccttgtctcgtccagacatccctgtcataattatacaataaacaaaa |
23612034 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 23843501 - 23843430
Alignment:
| Q |
84 |
tctacaacatgaatcttacccttatcattgtcttgcccagacatccctggtatgattatacaataaacaaaa |
155 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||| | ||||||||||||| || |||||||||||||||||| |
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| T |
23843501 |
tctacagcatgagccttacccttatccttgtctcgtccagacatccctgtcataattatacaataaacaaaa |
23843430 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 4136 - 4088
Alignment:
| Q |
84 |
tctacaacatgaatcttacccttatcattgtcttgcccagacatccctg |
132 |
Q |
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|||||||||||| |||||||||||| |||||| | ||||||||||||| |
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| T |
4136 |
tctacaacatgagccttacccttatctttgtctcgtccagacatccctg |
4088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 7402710 - 7402758
Alignment:
| Q |
84 |
tctacaacatgaatcttacccttatcattgtcttgcccagacatccctg |
132 |
Q |
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|||||||||||| |||||||||||| |||||| | ||||||||||||| |
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| T |
7402710 |
tctacaacatgagccttacccttatccttgtctcgtccagacatccctg |
7402758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 17557940 - 17557988
Alignment:
| Q |
84 |
tctacaacatgaatcttacccttatcattgtcttgcccagacatccctg |
132 |
Q |
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|||||||||||| |||||||||||| |||||| | ||||||||||||| |
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| T |
17557940 |
tctacaacatgagccttacccttatccttgtctcgtccagacatccctg |
17557988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 52475620 - 52475668
Alignment:
| Q |
84 |
tctacaacatgaatcttacccttatcattgtcttgcccagacatccctg |
132 |
Q |
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|||||||||||| |||||||||||| |||||| | ||||||||||||| |
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| T |
52475620 |
tctacaacatgagccttacccttatccttgtctcgtccagacatccctg |
52475668 |
T |
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