View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3617_high_2 (Length: 249)
Name: NF3617_high_2
Description: NF3617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3617_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 42534289 - 42534519
Alignment:
| Q |
19 |
ggaacaccgacccatcaccaccaaaaaccacaaaacagataacaaagtcggaactgccacaacgaaatgagccacaaagaaacgatctgcagctcgcacg |
118 |
Q |
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| T |
42534289 |
ggaacaccgacccatcaccaccaaaaaccacaaaacatataacaaagtcggaactgccacaacgaaatgagccacaaagaaatgatctgcagctcgcacg |
42534388 |
T |
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| Q |
119 |
tgctccgaccatagtaccgtggtggtggagtgacgcgaactgaagcaagggaagcagcaaaagtgcaacaaatgttgaagtttcttccttgatgagagat |
218 |
Q |
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| T |
42534389 |
tgctccgacaatagtaccgtggtggtggagtgacgcgaaccgaagcaagggaagcagcaaaagtgcaacaaatgttgaagtttcttccttgctgagagat |
42534488 |
T |
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| Q |
219 |
gaaaacatgctcctatgtgatttagcggcgc |
249 |
Q |
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| T |
42534489 |
gaaaacatgctcctatgtgattaagcggcgc |
42534519 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 35240824 - 35240758
Alignment:
| Q |
109 |
agctcgcacgtgctccgaccatagtaccgtggtggtggagtgacgcgaactgaagcaagggaagcag |
175 |
Q |
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| T |
35240824 |
agctctcacgcgctcccaccatggttcggtggtggtggagtgacgagaaccgaagcaggggaagcag |
35240758 |
T |
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