View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3617_high_3 (Length: 246)
Name: NF3617_high_3
Description: NF3617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3617_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39986576 - 39986354
Alignment:
| Q |
1 |
attttaccaaacctgcaaattactcaaacctttttaatcattatttgacacttgttaaggaaccattcattctaccaagttgata-aaatggatataagt |
99 |
Q |
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| T |
39986576 |
attttacaaaacctgcagattactcaaacctttttaatcattatttgacacttgttaaggaaccattcattctaccaagctgatagaaatggatatagat |
39986477 |
T |
|
| Q |
100 |
cgtccctgtgagtttagctcacttgataagaataatacataaaatatgcaagaatcgagtacgaacctcaaacacagtttctctaaccgctaaactactt |
199 |
Q |
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| T |
39986476 |
cgtccctgtgagcttagctcacttaatataaataatacataaaatatgcaaaagtcgagtacgaacctcaaacacaatttctcaaatcattaaactactt |
39986377 |
T |
|
| Q |
200 |
gacaaaagaaaaaagaagatata |
222 |
Q |
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| T |
39986376 |
gacaaaagagaaaagaagatata |
39986354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 15175135 - 15175186
Alignment:
| Q |
101 |
gtccctgtgagtttagctcacttgataagaataatacataaaatatgcaaga |
152 |
Q |
| |
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| T |
15175135 |
gtccttgtgagtttagctcagttgataagaataatgtataatatatgcaaga |
15175186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 1983960 - 1983930
Alignment:
| Q |
183 |
taaccgctaaactacttgacaaaagaaaaaa |
213 |
Q |
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| T |
1983960 |
taaccgctaaactacttgacaaaagaaaaaa |
1983930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 10320491 - 10320536
Alignment:
| Q |
102 |
tccctgtgagtttagctcacttgataagaataatacataaaatatg |
147 |
Q |
| |
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| T |
10320491 |
tccccgtgagtttagctcagttgataagaataatgcataatatatg |
10320536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 39433410 - 39433454
Alignment:
| Q |
107 |
gtgagtttagctcacttgataagaataatacataaaatatgcaag |
151 |
Q |
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|
| T |
39433410 |
gtgagcttagctcagttgatatgaacaatacataaaatatgcaag |
39433454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 47099101 - 47099052
Alignment:
| Q |
102 |
tccctgtgagtttagctcacttgataagaataatacataaaatatgcaag |
151 |
Q |
| |
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|||| ||||| |||||||| |||||||||||||| ||||| ||||||||| |
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|
| T |
47099101 |
tccccgtgagcttagctcagttgataagaataatgcataatatatgcaag |
47099052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 17634369 - 17634401
Alignment:
| Q |
115 |
agctcacttgataagaataatacataaaatatg |
147 |
Q |
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| T |
17634369 |
agctcacttgataagaacaatacataaaatatg |
17634401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 46532496 - 46532460
Alignment:
| Q |
177 |
tttctctaaccgctaaactacttgacaaaagaaaaaa |
213 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||| |
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| T |
46532496 |
tttctctaaccgctaagctacttgacaaaaaaaaaaa |
46532460 |
T |
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