View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3617_low_3 (Length: 246)

Name: NF3617_low_3
Description: NF3617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3617_low_3
NF3617_low_3
[»] chr2 (1 HSPs)
chr2 (1-222)||(39986354-39986576)
[»] chr4 (1 HSPs)
chr4 (101-152)||(15175135-15175186)
[»] chr5 (1 HSPs)
chr5 (183-213)||(1983930-1983960)
[»] chr8 (2 HSPs)
chr8 (102-147)||(10320491-10320536)
chr8 (107-151)||(39433410-39433454)
[»] chr3 (1 HSPs)
chr3 (102-151)||(47099052-47099101)
[»] chr1 (2 HSPs)
chr1 (115-147)||(17634369-17634401)
chr1 (177-213)||(46532460-46532496)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39986576 - 39986354
Alignment:
Q  1 attttaccaaacctgcaaattactcaaacctttttaatcattatttgacacttgttaaggaaccattcattctaccaagttgata-aaatggatataagt 99  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||  |    
T  39986576 attttacaaaacctgcagattactcaaacctttttaatcattatttgacacttgttaaggaaccattcattctaccaagctgatagaaatggatatagat 39986477  T
Q  100 cgtccctgtgagtttagctcacttgataagaataatacataaaatatgcaagaatcgagtacgaacctcaaacacagtttctctaaccgctaaactactt 199  Q
    |||||||||||| ||||||||||| |||  ||||||||||||||||||||| | |||||||||||||||||||||| |||||| || |  ||||||||||    
T  39986476 cgtccctgtgagcttagctcacttaatataaataatacataaaatatgcaaaagtcgagtacgaacctcaaacacaatttctcaaatcattaaactactt 39986377  T
Q  200 gacaaaagaaaaaagaagatata 222  Q
    ||||||||| |||||||||||||    
T  39986376 gacaaaagagaaaagaagatata 39986354  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 15175135 - 15175186
Alignment:
Q  101 gtccctgtgagtttagctcacttgataagaataatacataaaatatgcaaga 152  Q
    |||| ||||||||||||||| ||||||||||||||  |||| ||||||||||    
T  15175135 gtccttgtgagtttagctcagttgataagaataatgtataatatatgcaaga 15175186  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 1983960 - 1983930
Alignment:
Q  183 taaccgctaaactacttgacaaaagaaaaaa 213  Q
    |||||||||||||||||||||||||||||||    
T  1983960 taaccgctaaactacttgacaaaagaaaaaa 1983930  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 10320491 - 10320536
Alignment:
Q  102 tccctgtgagtttagctcacttgataagaataatacataaaatatg 147  Q
    |||| |||||||||||||| |||||||||||||| ||||| |||||    
T  10320491 tccccgtgagtttagctcagttgataagaataatgcataatatatg 10320536  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 39433410 - 39433454
Alignment:
Q  107 gtgagtttagctcacttgataagaataatacataaaatatgcaag 151  Q
    ||||| |||||||| |||||| ||| |||||||||||||||||||    
T  39433410 gtgagcttagctcagttgatatgaacaatacataaaatatgcaag 39433454  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 47099101 - 47099052
Alignment:
Q  102 tccctgtgagtttagctcacttgataagaataatacataaaatatgcaag 151  Q
    |||| ||||| |||||||| |||||||||||||| ||||| |||||||||    
T  47099101 tccccgtgagcttagctcagttgataagaataatgcataatatatgcaag 47099052  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 17634369 - 17634401
Alignment:
Q  115 agctcacttgataagaataatacataaaatatg 147  Q
    ||||||||||||||||| |||||||||||||||    
T  17634369 agctcacttgataagaacaatacataaaatatg 17634401  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 46532496 - 46532460
Alignment:
Q  177 tttctctaaccgctaaactacttgacaaaagaaaaaa 213  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  46532496 tttctctaaccgctaagctacttgacaaaaaaaaaaa 46532460  T

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