View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3618_low_1 (Length: 532)
Name: NF3618_low_1
Description: NF3618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3618_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 51 - 518
Target Start/End: Original strand, 1095705 - 1096172
Alignment:
| Q |
51 |
aagattgtcttcatatgtagtttctagttatcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagttt |
150 |
Q |
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| T |
1095705 |
aagattgtcttcatatgtagtttctagttatcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagttt |
1095804 |
T |
|
| Q |
151 |
aggacttaatctcaccttgcacaaaacatattgtgcttgtataaaaactttgctaagtatcatttctcaaagcttgttttggtgaaaatcatttttggtt |
250 |
Q |
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| T |
1095805 |
aggacttaatctcaccttgcacaaaacatattgtgcttgcataaaaactttgctaagtatcatttttcaaagcttgttttcgtgaaaatcatttttggtt |
1095904 |
T |
|
| Q |
251 |
tacttttgggttttatgtgcattttcaattctttaaaaacaaatttcttaaacttaaatctattcaaaagtcataactaactctcagaattgattcatgc |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
1095905 |
tacttttgggttttatgtgcattttcaattctttaaaaacaaatttcttaaacttaaatctattcaaaagtcataactaactctcggaatcgattcatgc |
1096004 |
T |
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| Q |
351 |
aagtcagagagatttgagttattttttaatcaatttgaatgattcaaaagtcataagctactctttgaatggattcactcaagttagagagtttctagtt |
450 |
Q |
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| T |
1096005 |
aagtcagagagatttgagttattttttaatcaatttgaatgattcaaaagtcataagctactctttgaatggattcactcaagttagagagtttctagtt |
1096104 |
T |
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| Q |
451 |
agttttgaatcgactcaaaactggatagaagaaacatcgaatcattttaatcttcatggaattcatct |
518 |
Q |
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| T |
1096105 |
agttttgaatcgactcaaaactggatagaagaaacatcgaatcattttaatcttcatggagttcatct |
1096172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 21715196 - 21715323
Alignment:
| Q |
81 |
tcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagtttaggacttaatctcaccttgcacaaaacata |
180 |
Q |
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|||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||| | | || | ||||||| | ||||||||||| |||||||| |
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| T |
21715196 |
tcttaggttttgagtgatgtcttatattcctcggatagttttagaagattgtattttgtttctctattgtaggactaattctcaccttgcttaaaacata |
21715295 |
T |
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| Q |
181 |
ttgtgcttgtataaaaactttgctaagt |
208 |
Q |
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| T |
21715296 |
ttttgcttgcataaaatctttgctaagt |
21715323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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