View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3618_low_4 (Length: 240)
Name: NF3618_low_4
Description: NF3618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3618_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28939356 - 28939133
Alignment:
| Q |
1 |
catgaggtgcaagtaatgagtctcgttttctcttatcctcagattcagtgttaaaaggnnnnnnnnnnnnnnnnnnaaaacacacgcagaaaataaggct |
100 |
Q |
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| T |
28939356 |
catgaggtgcaagtaatgagtctcgttttctcttatcctcagattctgtgttaaagggaagaagaagaagaagaagaaa-cacaagcagaaaataaggct |
28939258 |
T |
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| Q |
101 |
tgataaataattaaagaaacaacaaaatgtcattcactggaactcttgataaatgcaaggcttgtgacaagactgtttatgtggttgatttgttaactct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28939257 |
tgataaataattaaagaaacaacaaaatgtcattcactggaactctcgataaatgcaaggcttgtgacaagactgtttatgtggttgatttgttaactct |
28939158 |
T |
|
| Q |
201 |
tgaaggtataccttaccataaaagt |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
28939157 |
tgaaggtataccttaccataaaagt |
28939133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 11821023 - 11821120
Alignment:
| Q |
127 |
atgtcattcactggaactcttgataaatgcaaggcttgtgacaagactgtttatgtggttgatttgttaactcttgaaggtataccttaccataaaag |
224 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
11821023 |
atgtctttcactggaactcttgataaatgcaaggcttgtgacaagactgtttatgtggttgatttgttaactcttgaaaatattccataccataaaag |
11821120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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