View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3619_high_10 (Length: 239)
Name: NF3619_high_10
Description: NF3619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3619_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 4349913 - 4350014
Alignment:
| Q |
121 |
cccagatttatgattaacagaagaaaagtttgtaaacttactggtagcaatgtagaggttcagagcaaagagattcaattcaactactgagcttcgagga |
220 |
Q |
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| T |
4349913 |
cccagatttatgattaacagaagaaaaatttgtaaacttactggtagcaatgtag-ggttcagagcaaagagattcaattcaactactgagcttcgagga |
4350011 |
T |
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| Q |
221 |
atc |
223 |
Q |
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||| |
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| T |
4350012 |
atc |
4350014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4349792 - 4349853
Alignment:
| Q |
1 |
ctttcttcatttcctaccaattttaaaccccattaccacacaaacatttcatcaaacacttg |
62 |
Q |
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| T |
4349792 |
ctttcttcatttcctaccaattttaaaccccattaccacacaaacatttcatcaaacacttg |
4349853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4341954 - 4342018
Alignment:
| Q |
1 |
ctttcttcatttcctaccaattttaaaccccattaccacacaaacatttcatcaaacacttggta |
65 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||| | |||||| |||||||| |||||| |
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| T |
4341954 |
ctttcttcatttccgaccaattttaaaccccattactacatacacattttatcaaacagttggta |
4342018 |
T |
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