View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3619_high_11 (Length: 239)
Name: NF3619_high_11
Description: NF3619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3619_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52386335 - 52386550
Alignment:
| Q |
1 |
ttcatgttgacaacatccatactctgtattgttgattttatttaccatttattcatttacagtaagttaacaacattcatacttttataatcatatatat |
100 |
Q |
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| T |
52386335 |
ttcatgttgacaacatccatactctgtattgttgattttatttaccatttattcatttacagtaagttaacaacattcatacttttataatc----atat |
52386430 |
T |
|
| Q |
101 |
gacaggaacttcgctaccaatctgaaagatcaaaagttattggacgcatatgcaatggttgctataagaatttcttatcttctactaccatttaatatac |
200 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
52386431 |
gaaaggaacttcgctaccaatctgaaagatcacaagttattggacgcatatgcaatggttgctataagaatttcttatctt---ctaacatttaatatac |
52386527 |
T |
|
| Q |
201 |
ttatatccaaaatcatctttaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
52386528 |
ttatatccaaaatcatctttaat |
52386550 |
T |
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