View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3619_high_3 (Length: 390)
Name: NF3619_high_3
Description: NF3619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3619_high_3 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 41481764 - 41481383
Alignment:
| Q |
11 |
cacagagtggaatagtatatccattttggataaatttgcgctacagcttaaatttaataaatcctgttggcnnnnnnncgaaataccttttaattgttgc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
41481764 |
cacagagtggaatagtatatccattttggataaatttgcgctacagcttaaatttaataaatcctgttggctttttttcgatataccttttaattgttgc |
41481665 |
T |
|
| Q |
111 |
ccaaattaaatttagtgactaacaacaatcacataagccaacaaaatgtagaatacattgaaaaaattctaacaagtggagtaaaatatagagggacgca |
210 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41481664 |
ccaaattgaatttattgactaacaacaatcacataagccaacaaaatgtagaatacattgaaaaaattctaacaagtggagtaaaatatagagggacaca |
41481565 |
T |
|
| Q |
211 |
ta---ttcttcaacatgattttggtttctatttgataagtttctagtagcaaatgttatgatttagttcacataaccaatctctatcaacataatcttga |
307 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481564 |
tattcttcttcaacatgattttggtttctatttgataagtttctagtagcaaatgttatgatttagttcacataaccaatctctatcaacataatcttga |
41481465 |
T |
|
| Q |
308 |
aacacnnnnnnnnatgtaatccccaatcttcatgtccttgtttctattagcgtagcttttgtttcttgcatcgtaagcaatct |
390 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481464 |
aacac-tttttttatgcaatccccaatcttcatgtccttgtttctattagcgtagcttttgtttcttgcatcgtaagcaatct |
41481383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University