View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3619_high_6 (Length: 337)

Name: NF3619_high_6
Description: NF3619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3619_high_6
NF3619_high_6
[»] chr5 (1 HSPs)
chr5 (33-323)||(43150428-43150721)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 33 - 323
Target Start/End: Original strand, 43150428 - 43150721
Alignment:
Q  33 actcttgtgagttgacttcaaaatgtattctctttcaagaatattaaataatcttctcctttcgaaggttcattaatctctgattctcattggtaaaatt 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  43150428 actcttgtgagttgacttcaaaatgtattctctttcaagaatattaaataatcttctcctttcaaaggttcattaatctctgattgtcattggtaaaatt 43150527  T
Q  133 caaacatattcaatgttttcatgagtggttgatttcaaaatgttagaattcgatacc---acgataaccacaagcaacattgcaaatagttagacaaaaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||    
T  43150528 caaacatattcaatgttttcatgagtggttgatttcaaaatgttagaattcgataccataaccataaccacaagcaacattgcaaatagttagacaaaaa 43150627  T
Q  230 tgttaaagatttaaatccacaaaactttttgatatccaaaacataaaacttcattggtataataatatggcaaataagggaataatgttgtaag 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43150628 tgttaaagatttaaatccacaaaactttttgatatccaaaacataaaacttcattggtataataatatggcaaataagggaataatgttgtaag 43150721  T

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