View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3619_low_1 (Length: 576)
Name: NF3619_low_1
Description: NF3619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3619_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 15 - 569
Target Start/End: Complemental strand, 30865452 - 30864890
Alignment:
| Q |
15 |
ttatttctataacatttgattc-ataaaatgtgactatagtttatcatccttataattaatcaatactttttcaccagtaacattaagttagtaacactg |
113 |
Q |
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| T |
30865452 |
ttatttatatagcattttattccataaaatgtgactatagtttatcatccttataattaatcaatactttttcactagcaacattaagttagtaacactg |
30865353 |
T |
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| Q |
114 |
ctaatatgttactaaaaagtgacaaatttttcannnnnnnnnnatatagttcatggaaggtgtagaagcaaaatcttcatctgggtatggtaagcctcca |
213 |
Q |
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| T |
30865352 |
ctaatatgttactaaaaagtgacaaatttttcatttttattttttatagttcatggaaggtgtagaagcaaaatcttcatctgggtatggtaagcctcca |
30865253 |
T |
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| Q |
214 |
tggatatttagaggaaggtaagtttgaattttatactttatattatgttatgttattcatattgatattttactaactagttttgttatgtgtttattag |
313 |
Q |
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| T |
30865252 |
tggatatttagaggaaggtaagtttgaattttatactttatattatgttatgttattcatgttgatattttactaactagttttgttatgtgtttatcag |
30865153 |
T |
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| Q |
314 |
tgccttgtatcaactccatcttgtgaaagcagagaaagcaagagcatgtattccaaaagaattcaaattagttgaagcttttgggtatgtacttttactc |
413 |
Q |
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| T |
30865152 |
tgccttgtatcaactccatcttgtgaaagcagagaaagcaagagcatgtattccaaaagaattcaaattggttgaagcttttgggtatgtacttttactc |
30865053 |
T |
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| Q |
414 |
attgaagttgcttcaaaattcataattcttatatcaatttcttattgttttctcaaagtttgattttgaaac-------tgatgaatgcactaattatct |
506 |
Q |
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| T |
30865052 |
attgaagttgcttcaaaattcataatttttatataaatttcttattgttctcttaaggtttgattttgaaaccttgaattgatgaatgtactgattattt |
30864953 |
T |
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| Q |
507 |
acagatatactcttggtggattttttctagctagttatgatgatagtcctgtcggtgcctttg |
569 |
Q |
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| T |
30864952 |
ccagatatactcttggtggattttttctagctagttatgatgatagtccagtcggtgcctttg |
30864890 |
T |
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