View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3619_low_6 (Length: 337)

Name: NF3619_low_6
Description: NF3619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3619_low_6
NF3619_low_6
[»] chr5 (1 HSPs)
chr5 (33-323)||(43150428-43150721)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 33 - 323
Target Start/End: Original strand, 43150428 - 43150721
Alignment:
Q  33 actcttgtgagttgacttcaaaatgtattctctttcaagaatattaaataatcttctcctttcgaaggttcattaatctctgattctcattggtaaaatt 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  43150428 actcttgtgagttgacttcaaaatgtattctctttcaagaatattaaataatcttctcctttcaaaggttcattaatctctgattgtcattggtaaaatt 43150527  T
Q  133 caaacatattcaatgttttcatgagtggttgatttcaaaatgttagaattcgatacc---acgataaccacaagcaacattgcaaatagttagacaaaaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||    
T  43150528 caaacatattcaatgttttcatgagtggttgatttcaaaatgttagaattcgataccataaccataaccacaagcaacattgcaaatagttagacaaaaa 43150627  T
Q  230 tgttaaagatttaaatccacaaaactttttgatatccaaaacataaaacttcattggtataataatatggcaaataagggaataatgttgtaag 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43150628 tgttaaagatttaaatccacaaaactttttgatatccaaaacataaaacttcattggtataataatatggcaaataagggaataatgttgtaag 43150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University