View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3619_low_7 (Length: 312)
Name: NF3619_low_7
Description: NF3619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3619_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 41127330 - 41127030
Alignment:
| Q |
1 |
aacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgag |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
41127330 |
aacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaacactag |
41127231 |
T |
|
| Q |
101 |
ggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41127230 |
ggtccctccctatgtctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaacac |
41127131 |
T |
|
| Q |
201 |
aaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctctttaatttccttattctcttca |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41127130 |
aaagtgccccggtgggtgacacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctctttaatttccttattctcttca |
41127031 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
41127030 |
t |
41127030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 26506858 - 26506761
Alignment:
| Q |
82 |
ggatcttcccaaacacgagggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctc |
179 |
Q |
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||||| |||||||||| || |||| ||| | ||||||||||| ||||| ||| | |||||||||||| |||||||||||| |||| ||||||||| |
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| T |
26506858 |
ggatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctc |
26506761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 26494786 - 26494710
Alignment:
| Q |
109 |
cctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcac |
185 |
Q |
| |
|
||||| ||||||||||| |||||||| | |||||||||||| ||||||||| || ||||| | ||||||| |||| |
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|
| T |
26494786 |
cctatatctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcac |
26494710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2327303 - 2327023
Alignment:
| Q |
1 |
aacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgag |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||||| || |||||||||| |||||| ||||||||||||| |
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|
| T |
2327303 |
aacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgag |
2327204 |
T |
|
| Q |
101 |
ggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacac |
200 |
Q |
| |
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| ||| ||| || |||||||||||||||||||| | |||||||||||| ||| ||||| || ||||||||||| || |||| ||||| |||||||| |
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|
| T |
2327203 |
gatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaacac |
2327104 |
T |
|
| Q |
201 |
aaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
281 |
Q |
| |
|
||| ||||| ||||| |||||||||| ||||||||||| ||||||||| | ||| | || || ||||||||||||||||| |
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| T |
2327103 |
aaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctcttt |
2327023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2321450 - 2321169
Alignment:
| Q |
1 |
aacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgag |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| || |||||||||| |||||| ||||||||||||| |
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|
| T |
2321450 |
aacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgag |
2321351 |
T |
|
| Q |
101 |
ggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacac |
200 |
Q |
| |
|
| |||| | | || || | || |||||||||||| | |||||||||||| ||| |||||||| |||||||||||||| ||||||| || | |||||| |
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| T |
2321350 |
gatcccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaacac |
2321251 |
T |
|
| Q |
201 |
aaagtgcccc-ggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
281 |
Q |
| |
|
||| |||||| ||||| |||||||||| ||||||||||| ||| ||||| | |||| | || |||||||||| ||||||||| |
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| T |
2321250 |
aaaatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctcttt |
2321169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2303748 - 2303468
Alignment:
| Q |
1 |
aacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgag |
100 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||| |||||| |||||||||| |||||||||| || |||||||||| |||||| ||||||||||||| |
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|
| T |
2303748 |
aacggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactccattggatcctcccaaacacgag |
2303649 |
T |
|
| Q |
101 |
ggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacac |
200 |
Q |
| |
|
| |||| ||| || || |||| |||||||||||| | |||||||||||| ||| |||||||| |||||||||||||| |||||||| || ||||||| |
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| T |
2303648 |
gatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaacag |
2303549 |
T |
|
| Q |
201 |
aaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
281 |
Q |
| |
|
||| ||||||||||| |||||||||| ||||||||||| ||||| || | ||| | || |||||||| ||||||||||| |
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|
| T |
2303548 |
aaaatgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctcttt |
2303468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 281
Target Start/End: Complemental strand, 2351321 - 2351044
Alignment:
| Q |
4 |
ggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggt |
103 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||| | ||||||||||||||||| || || |||||||||| |||||| |||||||||||||| | |
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|
| T |
2351321 |
ggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgaggat |
2351222 |
T |
|
| Q |
104 |
ccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaa |
203 |
Q |
| |
|
||| ||| || ||||||||||| ||||| || | |||||||||||| ||| |||||||| |||| ||||||||| ||||||| || ||||||||| |
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|
| T |
2351221 |
cccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacatt |
2351122 |
T |
|
| Q |
204 |
gtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
281 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |||||| || ||||| || |||||||| ||||||||||| |
|
|
| T |
2351121 |
atgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctcttt |
2351044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2294135 - 2293855
Alignment:
| Q |
1 |
aacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgag |
100 |
Q |
| |
|
||||||||||||||||||||||| | || ||||| ||||||| ||||||||||||||||||||| || ||||||||||| || || ||||||||||||| |
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|
| T |
2294135 |
aacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaacgggtcctcccaaacacgag |
2294036 |
T |
|
| Q |
101 |
ggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacac |
200 |
Q |
| |
|
| ||| | | || || |||| || ||||||||| | | |||||||||| ||| ||||||| |||||||||||||| |||||||| || |||||| |
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|
| T |
2294035 |
gatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacgg |
2293936 |
T |
|
| Q |
201 |
aaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
281 |
Q |
| |
|
||| | ||||||||| |||||||||| ||||||||||| ||||||||| | ||| | || |||||||||||||||||||| |
|
|
| T |
2293935 |
aaatttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctcttt |
2293855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 281
Target Start/End: Complemental strand, 2331015 - 2330738
Alignment:
| Q |
4 |
ggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggt |
103 |
Q |
| |
|
|||||||||||||||||||| | || ||||| ||||||| ||||||||||||||||||||| || ||||| |||| |||||| |||||||||||||||| |
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|
| T |
2331015 |
ggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgagggt |
2330916 |
T |
|
| Q |
104 |
ccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaa |
203 |
Q |
| |
|
|| ||| || ||||| ||||| |||||||| | ||| |||||||| ||| ||||| || |||||||||||||| |||| || || |||||||| || |
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|
| T |
2330915 |
ccaaccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaacacgaa |
2330816 |
T |
|
| Q |
204 |
gtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
281 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||| ||| ||||| | ||| | || || ||||||||||||||||| |
|
|
| T |
2330815 |
atgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctcttt |
2330738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2310466 - 2310186
Alignment:
| Q |
1 |
aacggcatcatctttatctctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgag |
100 |
Q |
| |
|
||||||||||||||||||||||| | || | ||| |||||| ||||||||||||||||||||| || |||||||||||||| || |||||||||||| |
|
|
| T |
2310466 |
aacggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgac |
2310367 |
T |
|
| Q |
101 |
ggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacac |
200 |
Q |
| |
|
| ||| | | || || |||| | ||||||||| | | |||||||||| ||| ||||||| |||||||||||||| |||||||| || |||||| |
|
|
| T |
2310366 |
gatccaacgccatctccgccagaaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacgg |
2310267 |
T |
|
| Q |
201 |
aaagtgccccggtgggtgacgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt |
281 |
Q |
| |
|
||| | ||||| ||| |||||||||| ||||||||||| ||||||||| | ||| || |||||||||||||||||||| |
|
|
| T |
2310266 |
aaatttccccgatggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctcttt |
2310186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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