View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_high_1 (Length: 833)
Name: NF3620_high_1
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 41705931 - 41705459
Alignment:
| Q |
1 |
gagtagctaactgagctgggagagaaagtaatccacgaccgaagccagcgactccggtgggttcggagaaagttgtatgagcacaaccgaatgtgaattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41705931 |
gagtagctaactgagctgggagagaaagtaatccacgaccgaagccagcgactccggtgggttcggagaaagttgtatgagcacaaccgaatgtgaagtt |
41705832 |
T |
|
| Q |
101 |
tgtaagttgaagagtagaaagagaaagtgtatcgcgatagagagaagctattaagcttccatcgccgtaagcgtagtagaatggtggacagtgaaatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705831 |
tgtaagttgaagagtagaaagagaaagtgtatcgcgatagagagaagctattaagcttccatcgccgtaagcgtagtagaatggtggacagtgaaatgaa |
41705732 |
T |
|
| Q |
201 |
ccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagt |
300 |
Q |
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| T |
41705731 |
ccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagt |
41705632 |
T |
|
| Q |
301 |
tgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705631 |
tgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgca |
41705532 |
T |
|
| Q |
401 |
tgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaag |
473 |
Q |
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| T |
41705531 |
tgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaag |
41705459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 533 - 800
Target Start/End: Complemental strand, 41705399 - 41705132
Alignment:
| Q |
533 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtgtgttagaggt |
632 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41705399 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtgtgttagaggt |
41705300 |
T |
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| Q |
633 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gtatttgnnnnnn |
730 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41705299 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggtatttgtttttt |
41705200 |
T |
|
| Q |
731 |
ngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
800 |
Q |
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| T |
41705199 |
tgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
41705132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
371 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
451 |
Q |
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||||||||| ||||| | ||| |||| || ||||||||||||||||| || ||||||||||||||||| |||||| |||| |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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