View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3620_high_13 (Length: 320)
Name: NF3620_high_13
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_high_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 4750075 - 4749804
Alignment:
| Q |
8 |
cgaagaatattatacgtataaaggacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcaca |
107 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4750075 |
cgaacaatattatacgtataaattacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccattccgcataatttcaca |
4749976 |
T |
|
| Q |
108 |
aaatttagtttgtattcatgtttcgttgtccaataagctccaggatttgtag-gcaacatcaaagtagacctttccttcattcaaatccttctgaaattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4749975 |
aaatttagtttgtattcatgtttcgttgtccaataagctccaagatttgtagcgcaacatcaaagtagacctttccttcattcaaatccttctgaaattt |
4749876 |
T |
|
| Q |
207 |
gtagatcatatttcttcatacaatagcatgaattttgttaccctgaaaatgcaaatagttaaatagaaggaa |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4749875 |
gtagatcatatttcttcatacaatagcatgaattttgttaccctgaaaatgcaaatagttaaatagaaggaa |
4749804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 29966398 - 29966483
Alignment:
| Q |
170 |
agtagacctttccttcattcaaatccttctgaaatttgtagatcatatttcttcatacaatagcatgaattttgttaccctgaaaa |
255 |
Q |
| |
|
||||||||||||| || | || ||||||| |||||||||||||| | |||||| |||| | || ||||| ||||| ||||||||| |
|
|
| T |
29966398 |
agtagacctttccctcttgcaggtccttctcaaatttgtagatcagagttcttcgtacagtggcgtgaatcttgtttccctgaaaa |
29966483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 17894519 - 17894790
Alignment:
| Q |
8 |
cgaagaatattatacgtataaaggacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcaca |
107 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17894519 |
cgaacaatattatacgtataaatgacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcaca |
17894618 |
T |
|
| Q |
108 |
aaatttagtttgtattcatgtttcgttgtccaataagctccaggatttgtag-gcaacatcaaagtagacctttccttcattcaaatccttctgaaattt |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17894619 |
aaatttagtttgtattcatgtttccttgtccaataagctccaagatttgtagcgcaacatcaaagtagacctttccttcattcaaatccttctgaaattt |
17894718 |
T |
|
| Q |
207 |
gtagatcatatttcttcatacaatagcatgaattttgttaccctgaaaatgcaaatagttaaatagaaggaa |
278 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17894719 |
gtagatcatatttattcatacaatagcatgaattttgttaccctgaaaatgcaagtagttaaatagaaggaa |
17894790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 6444663 - 6444934
Alignment:
| Q |
8 |
cgaagaatattatacgtataaaggacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcaca |
107 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6444663 |
cgaacaatattatacgtataaatgacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcaca |
6444762 |
T |
|
| Q |
108 |
aaatttagtttgtattcatgtttcgttgtccaataagctccaggatttgtag-gcaacatcaaagtagacctttccttcattcaaatccttctgaaattt |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6444763 |
aaatttagtttgtattcatgtttccttgtccaataagctccaagatttgtagcgcaacatcaaagtagacctttccttcattcaaatccttctgaaattt |
6444862 |
T |
|
| Q |
207 |
gtagatcatatttcttcatacaatagcatgaattttgttaccctgaaaatgcaaatagttaaatagaaggaa |
278 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6444863 |
gtagatcatatttattcatacaatagcatgaattttgttaccctgaaaatgcaagtagttaaatagaaggaa |
6444934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 37188052 - 37187784
Alignment:
| Q |
8 |
cgaagaatattatacgtataaaggacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcaca |
107 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37188052 |
cgaacaatattatacgtataaatgacataataagaaacatcaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatgtcaca |
37187953 |
T |
|
| Q |
108 |
aaatttagtttgtattcatgtttcgttgtccaataagctccaggatttgtag-gcaacatcaaagtagacctttccttcattcaaatccttctgaaattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
37187952 |
aaatttagtttgtattcatgtttcgttgtccaataagctccaagatttgtagcgcaacatcaaagtagaacttcccttcattcaaatccttcttaaattt |
37187853 |
T |
|
| Q |
207 |
gtagatcatatttcttcatacaatagcatgaattttgttaccctgaaaatgcaaatagttaaatagaag |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37187852 |
gtagatcatatttcttcatacaatagcatgaattttgttaccctgaaaatgcaaatagttaaatagaag |
37187784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 48554712 - 48554627
Alignment:
| Q |
170 |
agtagacctttccttcattcaaatccttctgaaatttgtagatcatatttcttcatacaatagcatgaattttgttaccctgaaaa |
255 |
Q |
| |
|
||||||||||||| || | || ||||||| |||||||||||||| | |||||| |||| | || ||||| ||||| ||||||||| |
|
|
| T |
48554712 |
agtagacctttccctcttgcaggtccttctcaaatttgtagatcagagttcttcgtacagtggcgtgaatcttgtttccctgaaaa |
48554627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University