View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_high_15 (Length: 313)
Name: NF3620_high_15
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 41133265 - 41133372
Alignment:
| Q |
13 |
aatatgatagatgaatggggaaattatgctatgatttaagacgagcatgtgagtgaaagtgtgattgagaacttgagaaagtatgattttgcgtaattgt |
112 |
Q |
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| T |
41133265 |
aatatgatagatgaatggggaaattatgatatgatttaacacgagcatgtgagtgaaagggtgattgggaacttgagaaagtgtgattttgcgtaattgt |
41133364 |
T |
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| Q |
113 |
gaacttgt |
120 |
Q |
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|||||||| |
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| T |
41133365 |
gaacttgt |
41133372 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 41132789 - 41132749
Alignment:
| Q |
128 |
tgaaatatacgactcatgcaaatgatgacactcattaagga |
168 |
Q |
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| T |
41132789 |
tgaaatatactactcatgcaattgatgacactcattaagga |
41132749 |
T |
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