View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3620_high_17 (Length: 282)

Name: NF3620_high_17
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3620_high_17
NF3620_high_17
[»] chr7 (1 HSPs)
chr7 (35-271)||(43208559-43208798)
[»] chr1 (7 HSPs)
chr1 (141-237)||(45136775-45136871)
chr1 (143-237)||(38839716-38839810)
chr1 (148-247)||(33099679-33099778)
chr1 (222-274)||(68100-68152)
chr1 (145-236)||(3231883-3231975)
chr1 (222-262)||(24873768-24873808)
chr1 (222-262)||(24874601-24874641)
[»] chr2 (5 HSPs)
chr2 (143-273)||(16863382-16863510)
chr2 (144-273)||(34176569-34176697)
chr2 (143-262)||(13712951-13713071)
chr2 (169-244)||(2248986-2249061)
chr2 (147-274)||(16576177-16576303)
[»] chr8 (3 HSPs)
chr8 (205-273)||(7590336-7590404)
chr8 (169-270)||(34695778-34695880)
chr8 (166-244)||(39280900-39280978)
[»] chr5 (2 HSPs)
chr5 (218-262)||(14138544-14138588)
chr5 (223-264)||(17736929-17736970)
[»] chr4 (2 HSPs)
chr4 (222-274)||(15131595-15131647)
chr4 (147-187)||(49014285-49014325)
[»] chr3 (3 HSPs)
chr3 (148-262)||(7641777-7641891)
chr3 (206-244)||(20519519-20519557)
chr3 (143-247)||(46303295-46303398)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 35 - 271
Target Start/End: Original strand, 43208559 - 43208798
Alignment:
Q  35 ggcaaagaggtggaatgatgggatgtggtggtgtaattagagatgagaat---ggcaaatggttagataagtttgctaaatatcttgttcaaataaatga 131  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||    
T  43208559 ggcaaagaggtggtatgatgggatgtggtggtgtaattagagatgagaataatggcaaatggttagataagtttgctaaatatcttgttcgaataaatga 43208658  T
Q  132 ttttacatgacggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaat 231  Q
    || ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  43208659 ttatacatgatggttttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttatttttcttcatctttattcttacaat 43208758  T
Q  232 cagttaccatttttattttaagaatatcaaattccttcat 271  Q
    || |||||||||||||||||||||||||||||||||||||    
T  43208759 caattaccatttttattttaagaatatcaaattccttcat 43208798  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 45136871 - 45136775
Alignment:
Q  141 acggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagtta 237  Q
    |||||||||| |||| ||||||| ||| ||||||||| |||||| ||||||| || |||||  |  ||||||| |||||||||||||||||||||||    
T  45136871 acggttttttttacactatccctcgatgaattgaggaaaatttacccctatcaaagaaaaatctcattttcttcatctttattcttacaatcagtta 45136775  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 38839810 - 38839716
Alignment:
Q  143 ggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagtta 237  Q
    |||||||| |||||||||| ||| | ||||| |||||||||||  ||||| || |||||  || |||| || ||||||||||||||||| |||||    
T  38839810 ggttttttatacattatcctttgtttaattggggataatttatttctatcaaagaaaaatctaatttttttcatctttattcttacaattagtta 38839716  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 33099778 - 33099679
Alignment:
Q  148 tttctacattatcccttgataaattgaggataatttatccctatccaataaaaaat-tatttttctttatctttattcttacaatcagttaccattttta 246  Q
    |||||||||||| ||||||||||||| || ||||||| || |||| || ||||||  ||||||| ||| ||  |||||||||||||||||  ||||||||    
T  33099778 tttctacattattccttgataaattgggg-taatttacccatatcaaagaaaaaaaatatttttttttgtcaatattcttacaatcagttgtcattttta 33099680  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 68100 - 68152
Alignment:
Q  222 ttcttacaatcagttaccatttttattttaagaatatcaaattccttcatctc 274  Q
    |||||||||| ||||||||||||||||| ||||| ||| || | |||||||||    
T  68100 ttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctc 68152  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 3231883 - 3231975
Alignment:
Q  145 ttttttctacattatcc-cttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagtt 236  Q
    ||||||||||||||||| ||| |||| |||| | |||||||||| |||  || ||||| | ||||||||| || |||||  ||||||||||||    
T  3231883 ttttttctacattatccactttataagttgaaggtaatttatccatataaaagaaaaactcatttttcttcatgtttatctttacaatcagtt 3231975  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 24873768 - 24873808
Alignment:
Q  222 ttcttacaatcagttaccatttttattttaagaatatcaaa 262  Q
    |||||||||||| |||||||||| |||||||||| ||||||    
T  24873768 ttcttacaatcaattaccattttcattttaagaagatcaaa 24873808  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 24874601 - 24874641
Alignment:
Q  222 ttcttacaatcagttaccatttttattttaagaatatcaaa 262  Q
    |||||||||||| |||||||||| |||||||||| ||||||    
T  24874601 ttcttacaatcaattaccattttcattttaagaagatcaaa 24874641  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 16863382 - 16863510
Alignment:
Q  143 ggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatt 242  Q
    |||||||||||||||| |||   || ||||| || |||||||||| |||| || ||||| |  ||||||||  |||||||||||||||||||||||||||    
T  16863382 ggttttttctacattaccccaccatgaattgggg-taatttatccatatcaaagaaaaattcctttttcttc-tctttattcttacaatcagttaccatt 16863479  T
Q  243 tttattttaagaatatcaaattccttcatct 273  Q
    || || | ||||| |||||||| ||||||||    
T  16863480 ttcatctcaagaacatcaaatttcttcatct 16863510  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 273
Target Start/End: Original strand, 34176569 - 34176697
Alignment:
Q  144 gttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattat-ttttctttatctttattcttacaatcagttaccatt 242  Q
    |||||||||||||||||||||||  |||||||| |||| || ||||||   | || || |||| ||||||| |||||||||  |||||||||||||||||    
T  34176569 gttttttctacattatcccttgaataattgagggtaatata-ccctattagagaacaa-ttatattttcttcatctttatttctacaatcagttaccatt 34176666  T
Q  243 tttattttaagaatatcaaattccttcatct 273  Q
    || || |||||||||||||| | ||||||||    
T  34176667 ttcatcttaagaatatcaaacttcttcatct 34176697  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 262
Target Start/End: Complemental strand, 13713071 - 13712951
Alignment:
Q  143 ggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaa--at-tatttttctttatctttattcttacaatcagttacc 239  Q
    ||||||||||||  ||  || |||| |||||||||||||||| ||||||| || |||||  || ||||||| ||||| ||||||| ||||||| ||||||    
T  13713071 ggttttttctacgctactccatgatgaattgaggataattta-ccctatcaaagaaaaatcatatattttt-tttatatttattcctacaatcggttacc 13712974  T
Q  240 atttttattttaagaatatcaaa 262  Q
    |||||||| |||| ||| |||||    
T  13712973 atttttatcttaaaaatttcaaa 13712951  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 2249061 - 2248986
Alignment:
Q  169 aattgaggataatttatccctatccaataaaaaattat-ttttctttatctttattcttacaatcagttaccatttt 244  Q
    |||||||||||||||| | ||||| || ||||| | || ||||||| ||||||||||||| ||| ||||||||||||    
T  2249061 aattgaggataatttacctctatcaaagaaaaa-tcatattttcttcatctttattcttagaattagttaccatttt 2248986  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 16576177 - 16576303
Alignment:
Q  147 ttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattat-ttttctttatctttattcttacaatcagttaccattttt 245  Q
    ||||||||||||||| | ||| |||||  | ||||||| ||||||| || ||||| |||| ||||||| | |||| |||||||||||| ||||||||||     
T  16576177 ttttctacattatccttagatcaattggcg-taatttagccctatcaaagaaaaa-ttatcttttcttcaccttttttcttacaatcaattaccattttc 16576274  T
Q  246 attttaagaatatcaaattccttcatctc 274  Q
     | | ||||| |||||| | |||||||||    
T  16576275 ctctcaagaacatcaaacttcttcatctc 16576303  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 7590404 - 7590336
Alignment:
Q  205 atttttctttatctttattcttacaatcagttaccatttttattttaagaatatcaaattccttcatct 273  Q
    |||||||||  ||||||||||||||||| ||||||| ||| |||| ||||| |||||||| ||||||||    
T  7590404 atttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttcttcatct 7590336  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 34695778 - 34695880
Alignment:
Q  169 aattgaggataatttatcc-ctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatttttattttaagaatatcaaattcct 267  Q
    ||||||||||||||||||| || || || ||||| |   ||||||| ||||||||||||||||||||||| ||||||  ||| || | ||||||||| ||    
T  34695778 aattgaggataatttatcctctgtcaaagaaaaattctcttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttct 34695877  T
Q  268 tca 270  Q
    |||    
T  34695878 tca 34695880  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 39280900 - 39280978
Alignment:
Q  166 ataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatttt 244  Q
    |||||||| |||||||||| ||||||| || |||||     ||||||| ||||||||||||| ||||||||||||||||    
T  39280900 ataaattggggataatttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccatttt 39280978  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 14138544 - 14138588
Alignment:
Q  218 tttattcttacaatcagttaccatttttattttaagaatatcaaa 262  Q
    |||||||||||||||| |||||||||| || ||||||||||||||    
T  14138544 tttattcttacaatcaattaccattttcatcttaagaatatcaaa 14138588  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 17736970 - 17736929
Alignment:
Q  223 tcttacaatcagttaccatttttattttaagaatatcaaatt 264  Q
    ||||||||||  ||||||||||||| ||||||||||||||||    
T  17736970 tcttacaatcgattaccatttttatcttaagaatatcaaatt 17736929  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 15131647 - 15131595
Alignment:
Q  222 ttcttacaatcagttaccatttttattttaagaatatcaaattccttcatctc 274  Q
    ||||||| |||||||||||||||||| | ||||| |||||||| |||||||||    
T  15131647 ttcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctc 15131595  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 49014285 - 49014325
Alignment:
Q  147 ttttctacattatcccttgataaattgaggataatttatcc 187  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  49014285 ttttctacattaccccttgatgaattgaggataatttatcc 49014325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 7641777 - 7641891
Alignment:
Q  148 tttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatttttat 247  Q
    |||||| |||| ||||| |  ||| |||| ||||||| ||||||| || ||||  ||  ||||||| | ||||||||||| ||||||||| |||||||||    
T  7641777 tttctagattaccccttaaagaatagagggtaatttacccctatcaaagaaaattttcattttcttcaactttattcttaaaatcagttatcatttttat 7641876  T
Q  248 tttaagaatatcaaa 262  Q
     | ||||| ||||||    
T  7641877 atcaagaacatcaaa 7641891  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 20519557 - 20519519
Alignment:
Q  206 tttttctttatctttattcttacaatcagttaccatttt 244  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  20519557 tttttcttcatctttcttcttacaatcagttaccatttt 20519519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 46303295 - 46303398
Alignment:
Q  143 ggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatt 242  Q
    ||||||||||||||||| ||||||| ||||| |  |||||||  |||||| || |||||  ||||||| || ||| || ||||||||||||  || ||||    
T  46303295 ggttttttctacattattccttgatgaattgggagtaatttactcctatcaaagaaaaatctattttttttcatcatt-ttcttacaatcaaatatcatt 46303393  T
Q  243 tttat 247  Q
    |||||    
T  46303394 tttat 46303398  T

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