View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_high_2 (Length: 743)
Name: NF3620_high_2
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 229 - 603
Target Start/End: Original strand, 27005406 - 27005780
Alignment:
| Q |
229 |
attaaccttaattaacacatgttttggtaaagattaggggcatgtggaattaatatgaaaatgaaagtaggtaggtagaatggaagattatgatagttag |
328 |
Q |
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| T |
27005406 |
attaaccttaattaacacatgttttggtaaagattaggggcatgtggaattaatatgaaaatgaaagtaggtagctagaatggaagattatgatagttag |
27005505 |
T |
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| Q |
329 |
gttatgaatatgttttggtaaagacttattcatcattaacctttgtacgtataagcttgttgtgtctatcttcaatcctgttaggtaattaggttttcct |
428 |
Q |
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| T |
27005506 |
gttatgaatatgttttggtaaagacttattcatcattaacctttgtacgtataagcttgttgtgtctatcttcaatcctgttaggtaattaggttttcct |
27005605 |
T |
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| Q |
429 |
ttctttctcaaactgattcatgtccccaattttaagaaaatctgcacatcaatcaagtattggtgtatgtataatatttttattaacatgattgcgtagt |
528 |
Q |
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| T |
27005606 |
ttctttctcaaactgattcatgtccccaattttaagaaaatctgcacatcaatgaagtattggtgtatgtataatttttttatgaacatgattgcgtagt |
27005705 |
T |
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| Q |
529 |
caatttgcatacatatagacactgcttgaattgtatacgcatcgatctagatctgcagaacaataatcagaaaat |
603 |
Q |
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| T |
27005706 |
aaatttgcatacatatagacactgcttgaattgtatacgcatcgatctagatctgcagaacaataatcagaaaat |
27005780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27005210 - 27005389
Alignment:
| Q |
1 |
acatcgatgataatatttttaagtatgtttggattgacggtgaatttgacataatgatagcatgtgacttggtgacaaaaacatgcattttttagcttga |
100 |
Q |
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| T |
27005210 |
acatcgatgataatatttttaagtatgtttgaattgacggtgaatttgacataatgatagcatgtgacttggtgacaaaaacatgcattttttagcttga |
27005309 |
T |
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| Q |
101 |
acaaaatcatgtgtaaagtcaatcatattgttattcagaacgtacacaattgtggtcttgcatacaaatttgttgatagtcatgtcaatcataaag |
196 |
Q |
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| T |
27005310 |
acaa----------------aatcatattgttattcagaacgtgcacaattgtggtcttgcatacaaatttgttgatagtcatgtcaatcataaag |
27005389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 603 - 726
Target Start/End: Original strand, 27005820 - 27005943
Alignment:
| Q |
603 |
ttatgttgatatttttacagatagtctaatcaatggagaaattctgtacagctctagtctcattttcagtttatttattccaataagattatagtttctc |
702 |
Q |
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| T |
27005820 |
ttatgttgatatttgtacagatagtctaatcaatggagaaattctgtacagctctagtctcattttcagttaatttattccaataagattatagtttctc |
27005919 |
T |
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| Q |
703 |
atacacattttctaaatttatagt |
726 |
Q |
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| T |
27005920 |
atacacattttctaaatttatagt |
27005943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 4506787 - 4506757
Alignment:
| Q |
25 |
atgtttggattgacggtgaatttgacataat |
55 |
Q |
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| T |
4506787 |
atgtttggattgacggtgaatttgacataat |
4506757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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