View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_high_29 (Length: 213)
Name: NF3620_high_29
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 47050051 - 47049898
Alignment:
| Q |
47 |
tctcaactccaatgtctaccataaatcccaaattaatttttcatatctaaactcataaataaaaacttccggagtgtaatctcttcccagtcctcttaga |
146 |
Q |
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| T |
47050051 |
tctcaactccaatgtctaccataaatcccaaattaatttttcatatctaaactcataaataaaaacttccggagtgtaatctcttcccagtcctcttaga |
47049952 |
T |
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| Q |
147 |
cgttgttcttgccatcgctcatcattcttgtattgcttcacttcttttcatctc |
200 |
Q |
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| T |
47049951 |
cgttgttcttgccatcgctcatcattcttgtattgcttcacttcttttcatctc |
47049898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 10712109 - 10712260
Alignment:
| Q |
47 |
tctcaactccaatgtctaccataaatcccaaattaatttttcatatctaaactcataaataaaaacttccggagtgtaatctcttcccagtcctcttaga |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10712109 |
tctcaactccaatgtctaccataaatcccaaattaatttttcatattgaaactcataaataaaaacttccggagtgtaatctcttctcagtcctcttaga |
10712208 |
T |
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| Q |
147 |
cgttgttcttgccatcgctcatcattcttgtattgcttcacttcttttcatc |
198 |
Q |
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| T |
10712209 |
cgttgttcttgccatcgctcatcattcttgtattgcttcacttcttttcatc |
10712260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 10722171 - 10722020
Alignment:
| Q |
47 |
tctcaactccaatgtctaccataaatcccaaattaatttttcatatctaaactcataaataaaaacttccggagtgtaatctcttcccagtcctcttaga |
146 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10722171 |
tctcaactccaatgtctaccataaatctcaaattaatttttcatatctaaactcataaataaaaacttccggagtttaatctcttcccagtcctcttaga |
10722072 |
T |
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| Q |
147 |
cgttgttcttgccatcgctcatcattcttgtattgcttcacttcttttcatc |
198 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10722071 |
cgttgtttttgccatcgctcatcattcttgtattgcttcacttcttttcatc |
10722020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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