View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_high_4 (Length: 534)
Name: NF3620_high_4
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 526
Target Start/End: Original strand, 47122295 - 47122823
Alignment:
| Q |
14 |
aggaccgtattaggtttatattcctagtagttgtgtgcctattactcgtgtatcattttatcaaagatatcattatagtcattaccatgttggtttgatc |
113 |
Q |
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| T |
47122295 |
aggaccgtattaggtttatattcctagtagttgtgtgcctattacttgtgtatcattttatcaaagatatcattatagtcattaccatgttggtttgatc |
47122394 |
T |
|
| Q |
114 |
tctacttttacataatttggt-----------------taaattagttttgggttc-tacaaatatagtgaattttgtttttagtctttgtatccacttt |
195 |
Q |
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| T |
47122395 |
tctacttttacataatttggtacttttttaaataagattaaattagttttgggttcctacaaatatagtgaattttgtttttaatctttgtatccatttt |
47122494 |
T |
|
| Q |
196 |
gtagtccatacaaatnnnnnnnntacatttttaagtccctaaacaagtgattaaaagtatattatttgtattctgtagtgtccatatacttctctgactc |
295 |
Q |
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| T |
47122495 |
gtagtccatacaa--tacaaaaatacatttttaagtccttaaacgagtgactaaaagtatattatttgtattatgtagtgtccatatacttctctgactc |
47122592 |
T |
|
| Q |
296 |
aaatatcatcctccggataaatttatataatcctttaacaaattgttttatctcaaataaaattattttcttataaaaacttaaaaatccacatcaaatt |
395 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47122593 |
caatgtcatcctccggataaatttatataatcctttaacaaattgttttatctcaaataaaattattttcttataaaaacttaaaaatccacatcaaatt |
47122692 |
T |
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| Q |
396 |
gaaaattaccttgcaagcctaagtacttataatcaaaatggtcaagaaatgatattcacacattcatataagagacgcttttgctacaagctacatttgc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47122693 |
gaaaattaccttgcaagcctaagtacttataatcaaaatggtcaagaaatgatattcacacattcatataagagacgcttttgctacaagctacatttgc |
47122792 |
T |
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| Q |
496 |
taatttatctttaaaatacatgtttcatctc |
526 |
Q |
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| T |
47122793 |
taatttatctttaatatacatgtttcatctc |
47122823 |
T |
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