View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3620_high_5 (Length: 526)

Name: NF3620_high_5
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3620_high_5
NF3620_high_5
[»] chr1 (4 HSPs)
chr1 (18-522)||(2305628-2306132)
chr1 (308-522)||(34980271-34980485)
chr1 (308-522)||(34975491-34975705)
chr1 (308-522)||(34989326-34989540)
[»] chr3 (11 HSPs)
chr3 (308-522)||(22657209-22657423)
chr3 (308-522)||(22621057-22621271)
chr3 (308-515)||(22648309-22648515)
chr3 (320-384)||(22615540-22615604)
chr3 (322-384)||(22458770-22458832)
chr3 (322-384)||(22481751-22481813)
chr3 (320-363)||(22115206-22115249)
chr3 (318-363)||(22028119-22028164)
chr3 (318-363)||(22187107-22187152)
chr3 (474-522)||(21930696-21930744)
chr3 (474-522)||(22115360-22115408)
[»] chr4 (1 HSPs)
chr4 (334-374)||(29610862-29610902)
[»] scaffold1439 (1 HSPs)
scaffold1439 (494-522)||(1780-1808)


Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 2306132 - 2305628
Alignment:
Q  18 aaatgtgaaatattgatgtagtaagatgagagtgatggaataagatgagatgtttaatgagtatgagtatgaaaattaagggtgtataaatatcattgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2306132 aaatgtgaaatattgatgtagtaagatgagagtgatggaataagatgagatgtttaatgagtatgagtatgaaaattaagggtgtataaatatcattgtt 2306033  T
Q  118 ttttatggtttgatcggtggcaatgaaattactatttgacaagatagctactatatggtgtttattcacgtgaataaaacttggttagttcgccataaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2306032 ttttatggtttgatcggtggcaatgaaattactatttgacaagatagctactatatggtgtttattcacgtgaataaaacttggttagttcgccataaaa 2305933  T
Q  218 tataatgatactgtttgattaaactgatactgttttggtaggataattaaaaatattattgaacaaggaaagcattcaagccttccttcaaaagaggttg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2305932 tataatgatactgtttgattaaactgatactgttttggtaggataattaaaaatattattgaacaaggaaagcattcaagccttccttcaaaagaggttg 2305833  T
Q  318 tgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacgaacaaaaagt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2305832 tgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacgaacaaaaagt 2305733  T
Q  418 agaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttttgtgtttgat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2305732 agaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttttgtgtttgat 2305633  T
Q  518 gatgt 522  Q
     ||||    
T  2305632 aatgt 2305628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 308 - 522
Target Start/End: Original strand, 34980271 - 34980485
Alignment:
Q  308 aaagaggttgtgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacg 407  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| |||    
T  34980271 aaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagtattgctgagacgcatgttgaagaagctttacg 34980370  T
Q  408 aacaaaaagtagaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttt 507  Q
    ||||||||| ||||  ||  | | ||||||||  |||||||||||||| || |||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  34980371 aacaaaaaggagaacatcctcttgaagatatcactgaaatggatcgagatgcattgatttatgagttgagaaattacttgcagaaaaagaggtatgtttt 34980470  T
Q  508 tgtgtttgatgatgt 522  Q
    |||||||||||||||    
T  34980471 tgtgtttgatgatgt 34980485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 308 - 522
Target Start/End: Original strand, 34975491 - 34975705
Alignment:
Q  308 aaagaggttgtgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacg 407  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |  ||||| |||| ||||  ||||||| |||||||| |||    
T  34975491 aaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcacacaacactgaagtattgtcgagacacatgttggagaagctttacg 34975590  T
Q  408 aacaaaaagtagaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttt 507  Q
     |||||||| ||||   |  |||||||  |||  ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  34975591 gacaaaaaggagaaaaacctcctaaaggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttt 34975690  T
Q  508 tgtgtttgatgatgt 522  Q
    |||||||||||||||    
T  34975691 tgtgtttgatgatgt 34975705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 308 - 522
Target Start/End: Original strand, 34989326 - 34989540
Alignment:
Q  308 aaagaggttgtgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacg 407  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |  ||||| |||| ||||  ||||||| |||||||| |||    
T  34989326 aaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcaaacaacactgaagtattgtcgagacacatgttggagaagctttacg 34989425  T
Q  408 aacaaaaagtagaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttt 507  Q
     |||||||| ||||   |  |||||||  |||  ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  34989426 gacaaaaaggagaaaaacctcctaaaggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttt 34989525  T
Q  508 tgtgtttgatgatgt 522  Q
    |||||||||||||||    
T  34989526 tgtgtttgatgatgt 34989540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 308 - 522
Target Start/End: Complemental strand, 22657423 - 22657209
Alignment:
Q  308 aaagaggttgtgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacg 407  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||| ||||| ||     
T  22657423 aaagaggttgttggacactttgaatgtcgtgtttggatcacagtgtcacaatcttacaatatagaagtgttgttgagacgcatgttgaaggagctttaca 22657324  T
Q  408 aacaaaaagtagaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttt 507  Q
    ||||||||| |||   ||  ||| ||||||||  ||||||||||||||| | |||||||| |||| ||||||| ||||||||||| ||||||||||||||    
T  22657323 aacaaaaaggagacaatcctcctcaagatatcactgaaatggatcgaggcgcattgatttctgagctgagaaaatacttgcagaaaaagaggtatgtttt 22657224  T
Q  508 tgtgtttgatgatgt 522  Q
    |||||||||||||||    
T  22657223 tgtgtttgatgatgt 22657209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 308 - 522
Target Start/End: Complemental strand, 22621271 - 22621057
Alignment:
Q  308 aaagaggttgtgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacg 407  Q
    ||||||||  |||||||||| |||| |||||||||| ||||| |||||||||||||| ||||||| |  ||| |||||| |||||||||| || || ||     
T  22621271 aaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacgatatagaggggttgctgagatacatgttgaaggagatttacc 22621172  T
Q  408 aacaaaaagtagaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttt 507  Q
    ||||||||| |||    |   || ||||||||| ||||||||||| |||   |||||||| | ||||||||||  |||||||  | ||||||||||||||    
T  22621171 aacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaaccacttgcaacaaaagaggtatgtttt 22621072  T
Q  508 tgtgtttgatgatgt 522  Q
    ||| |||||||||||    
T  22621071 tgtatttgatgatgt 22621057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 515
Target Start/End: Complemental strand, 22648515 - 22648309
Alignment:
Q  308 aaagaggttgtgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacg 407  Q
    |||||||| | |||||||||||||| |||||||||||||| | |||  ||||||||| ||| |||||  ||| ||||| ||||||||||  ||||| ||     
T  22648515 aaagaggtagcgggacactttgaatttcgtgtatggatcaaagtgttgcaatcatactatacagaagggttgctgagaggcatgttgaatgagctttaca 22648416  T
Q  408 aacaaaaagtagaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttt 507  Q
    ||||||||| ||||   |  ||||||| |||||   |||||||| ||||    ||||||| |||| ||||||| ||||||||  | ||||||||||||||    
T  22648415 aacaaaaaggagaagagcctcctaaaggtatctcgaaaatggat-gagggtcgttgatttctgagctgagaaactacttgcaacaaaagaggtatgtttt 22648317  T
Q  508 tgtgtttg 515  Q
     |||||||    
T  22648316 cgtgtttg 22648309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 22615604 - 22615540
Alignment:
Q  320 ggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgag 384  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||  ||||||||    
T  22615604 ggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgag 22615540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 22458832 - 22458770
Alignment:
Q  322 acactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgag 384  Q
    ||||||||| |||| ||||||||||| | |||| ||||||||||||||||||| |||| ||||    
T  22458832 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgag 22458770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 22481813 - 22481751
Alignment:
Q  322 acactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgag 384  Q
    ||||||||| |||| ||||||||||| | |||| ||||||||||||||||||| |||| ||||    
T  22481813 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgag 22481751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 363
Target Start/End: Original strand, 22115206 - 22115249
Alignment:
Q  320 ggacactttgaatgtcgtgtatggatcacaatgtcacaatcata 363  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||    
T  22115206 ggacactttgattgtcgtgtatggatcacagtgtctcaatcata 22115249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 22028119 - 22028164
Alignment:
Q  318 tgggacactttgaatgtcgtgtatggatcacaatgtcacaatcata 363  Q
    ||||||||||||| |||||||||||||| ||| |||| ||||||||    
T  22028119 tgggacactttgattgtcgtgtatggattacagtgtctcaatcata 22028164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 22187107 - 22187152
Alignment:
Q  318 tgggacactttgaatgtcgtgtatggatcacaatgtcacaatcata 363  Q
    ||||||||||||| |||||||||||||| ||| |||| ||||||||    
T  22187107 tgggacactttgattgtcgtgtatggattacagtgtctcaatcata 22187152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 21930696 - 21930744
Alignment:
Q  474 tgagaaagtacttgcagaataagaggtatgtttttgtgtttgatgatgt 522  Q
    ||||||| | ||||||||| |||||||||||| | ||||||||||||||    
T  21930696 tgagaaaatgcttgcagaaaaagaggtatgttgtcgtgtttgatgatgt 21930744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 22115360 - 22115408
Alignment:
Q  474 tgagaaagtacttgcagaataagaggtatgtttttgtgtttgatgatgt 522  Q
    ||||||| ||||||||||| |||||||| ||| | ||||||||||||||    
T  22115360 tgagaaaatacttgcagaaaaagaggtacgttgtcgtgtttgatgatgt 22115408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 29610902 - 29610862
Alignment:
Q  334 tcgtgtatggatcacaatgtcacaatcatacaatatagaag 374  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  29610902 tcgtgtatggatcacagtatcacaatcatacaatatagaag 29610862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1439 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 494 - 522
Target Start/End: Complemental strand, 1808 - 1780
Alignment:
Q  494 aagaggtatgtttttgtgtttgatgatgt 522  Q
    |||||||||||||||||||||||||||||    
T  1808 aagaggtatgtttttgtgtttgatgatgt 1780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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