View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3620_high_7 (Length: 450)
Name: NF3620_high_7
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_high_7 |
 | |
|
| [»] scaffold1439 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 22615433 - 22614993
Alignment:
| Q |
1 |
tacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22615433 |
tacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaa |
22615334 |
T |
|
| Q |
101 |
caaggaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22615333 |
caaggaatatagatgttgcactttcttgtaagagatcttcgttagtcaaagtgcatgagttgcaacctttaactgaagaacaatctctggagttgtttaa |
22615234 |
T |
|
| Q |
200 |
taagaaggcatttcaatttgacaaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22615233 |
taagaaggcatttcaatttgacaaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaatt |
22615134 |
T |
|
| Q |
300 |
gttgccatcggaggtcttttatctttaagagataaaaattcaatcgagtggaagaggttttgtgaaaatctactcctagagctaaacaaggattccaatt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22615133 |
gttgccatcggaggtcttttatctttaagagataaaaattcaatcgagtggaagaggttttgtgaaaatctactcttagagctaaacaaggattccaatt |
22615034 |
T |
|
| Q |
400 |
taattgggattaaagagattttaagtttgagttatgatgat |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22615033 |
taattgggattaaagagattttaagtttgagttataatgat |
22614993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 4 - 440
Target Start/End: Original strand, 21930725 - 21931165
Alignment:
| Q |
4 |
gttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaa |
103 |
Q |
| |
|
||||| |||||||||||||| ||||| | ||||||||| |||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21930725 |
gttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaatttgctgcaattgatagtaaaaatggaagtaagatatttataacaacaa |
21930824 |
T |
|
| Q |
104 |
ggaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataa |
202 |
Q |
| |
|
|||| || ||||||| | |||||||| | |||||| | | || ||| ||||||||||||||||||| | ||||||||| |||||||||| ||||| |
|
|
| T |
21930825 |
ggaacatggatgttgtggtgtcttgtaaaaaatcttctttcattgaaatgcttgagttgcaacctttaactcatgaacaatctttggagttgttcaataa |
21930924 |
T |
|
| Q |
203 |
gaaggcatttcaatttgacaa--at-gttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaatt |
299 |
Q |
| |
|
||||||||| |||||||| | || | |||||||||| ||||||||||| || | || |||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
21930925 |
gaaggcattcaaatttgactatgatgggtgttgtccaacagagctcattggtacaactaatgaaattgttaaaaaatgcaatggtttaccgctagcaatt |
21931024 |
T |
|
| Q |
300 |
gttgccatcggaggtcttttatctttaagagataaaaattcaatcgagtggaagaggttttgtgaaaatctactcctagagctaaacaaggattccaatt |
399 |
Q |
| |
|
||||||||||| || ||||||||| |||||| |||||| | |||||| || | ||| | ||||||||| |||||||||| | ||||| || |
|
|
| T |
21931025 |
gttgccatcggtggacttttatctacaagagagaaaaatgtgtttgagtggcagcgatttagagaaaatctaaatttagagctaaagacagattcacatc |
21931124 |
T |
|
| Q |
400 |
taattgggattaaagagattttaagtttgagttatgatgat |
440 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
21931125 |
taattgggataaaagaaattttaagtttaagttatgatgat |
21931165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 30989464 - 30989148
Alignment:
| Q |
7 |
gttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaagga |
106 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
30989464 |
gttgtgtttgatgatgtttggagtgtacatttttgggatgatattgaatttgctgtaattgataataaaaatggaagtaagatatttatcacaacaagaa |
30989365 |
T |
|
| Q |
107 |
atatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaa |
205 |
Q |
| |
|
| ||||||||| | |||||||| | |||||| | | |||||| ||||||||||||||||| |||| |||||||| |||||||||| |||||||| |
|
|
| T |
30989364 |
acctagatgttgtgttgtcttgtaaaaaatcttcttatattgaagtgcttgagttgcaacctttaaatgaacaacaatctttggagttgttcaataagaa |
30989265 |
T |
|
| Q |
206 |
ggcatttcaatttgacaa---atgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgtt |
302 |
Q |
| |
|
|||||| ||||||| | ||||||||||||| |||||||||| |||| ||||||| |||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
30989264 |
ggcattcagatttgaccatggtggttgttgtccaaaggagctcattggtatagcttatgaaattgttaaaaaatgtaacggtttaccgctagcaattgtt |
30989165 |
T |
|
| Q |
303 |
gccatcggaggtctttt |
319 |
Q |
| |
|
||||| ||||| ||||| |
|
|
| T |
30989164 |
gccattggaggactttt |
30989148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 22115386 - 22115727
Alignment:
| Q |
1 |
tacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaa |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | ||||||||| |||| ||||||| | |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22115386 |
tacgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattgatagtaaaaatggaagtaagatatttataacaa |
22115485 |
T |
|
| Q |
101 |
caaggaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaa |
199 |
Q |
| |
|
|||| || || ||||||| | |||||||| | |||||| | | | |||| | || |||||||||||||| |||||||||| || ||||||| || |
|
|
| T |
22115486 |
caagaaacatggatgttgtgttgtcttgtaaaaaatcttctttcattgaggtgctttagctgcaacctttaactcaagaacaatcattgaagttgttcaa |
22115585 |
T |
|
| Q |
200 |
taagaaggcatttcaatttgacaa---atgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagca |
296 |
Q |
| |
|
|||||||||||| |||||||| | | | | |||||| ||||||||||||| |||| || |||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
22115586 |
taagaaggcattcaaatttgactacggagggtcttgtcccaaagagctcattggtatagctaatgaaattgttaaaaaatgcaagggtttaccgctagca |
22115685 |
T |
|
| Q |
297 |
attgttgccatcggaggtcttttatctttaagagataaaaat |
338 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||| |||||| |
|
|
| T |
22115686 |
attgttgccatcggtggacttttatctacaagagagaaaaat |
22115727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 5 - 440
Target Start/End: Original strand, 22034822 - 22035261
Alignment:
| Q |
5 |
ttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaag |
104 |
Q |
| |
|
||||||| ||||||||||| ||||| | ||||||||| |||| ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22034822 |
ttgttgtctttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattgatagtaaaaatggaagtaagatatttataacaacaag |
22034921 |
T |
|
| Q |
105 |
gaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataag |
203 |
Q |
| |
|
|| || ||||||| | |||||||| | |||||| | | | |||| |||| |||||||||||||| |||||||||| || ||||||| |||||| |
|
|
| T |
22034922 |
aaacatggatgttgtgttgtcttgtaaaaaatcttctttcattgaggtgcttgagctgcaacctttaactcaagaacaatcattgaagttgttcaataag |
22035021 |
T |
|
| Q |
204 |
aaggcatttcaatttgacaa---atgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattg |
300 |
Q |
| |
|
|||||||| |||||||| | | | | |||||| ||||||||||||| |||| || |||| ||||||||||| || || ||||| ||||||||||||| |
|
|
| T |
22035022 |
aaggcattcaaatttgactacggagggtcttgtcccaaagagctcattggtatagctaatgaaattgttaaaaagtgaaagggtttgccactagcaattg |
22035121 |
T |
|
| Q |
301 |
ttgccatcggaggtcttttatctttaagagataaaaattcaatcgagtggaagaggttttgtgaaaatctactcctagagctaaacaaggattccaattt |
400 |
Q |
| |
|
|||| || || || ||||||||| |||||| |||||| | |||||| |||| ||| | |||||| || |||||||||| | ||| | || | |
|
|
| T |
22035122 |
ttgctattggtggacttttatctacaagagagaaaaatgtgtttgagtggcagagatttagagaaaatttaaatttagagctaaagacagatacacatct |
22035221 |
T |
|
| Q |
401 |
aattgggattaaagagattttaagtttgagttatgatgat |
440 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
22035222 |
aattgggataaaagaaattttaagtttaagttatgatgat |
22035261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 22657224 - 22656905
Alignment:
| Q |
8 |
ttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaa |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| |||||| |||| |||||||||| |||||||||||||| |||||||| || |
|
|
| T |
22657224 |
ttgtgtttgatgatgtatggaacaaaagtttttgggatgagattgaatatgctgttggtgatcataaaaatgggagtaagatatttattacaacaagaaa |
22657125 |
T |
|
| Q |
108 |
tatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaag |
206 |
Q |
| |
|
||| |||||||| | | |||||||| |||||| || | |||||| ||| | || |||||||| | |||||||||| | |||||||||||||||||| |
|
|
| T |
22657124 |
tatggatgttgcggtgtattgtaagaaatcttcttttattgaagtgcatgaactacatcctttaacagtagaacaatcttttgagttgtttaataagaag |
22657025 |
T |
|
| Q |
207 |
gcatttcaatttgac---aaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttg |
303 |
Q |
| |
|
|| |||||||||||| || | ||||||||||||||||||||||||||||||| || |||| || |||||||||||||||||| || |||||||| | |
|
|
| T |
22657024 |
gcctttcaatttgactttaatggatgttgtccaaaagagctcattgatatatcttccgaaattgctagaaaatgcaaaggtttaccgctggcaattgtgg |
22656925 |
T |
|
| Q |
304 |
ccatcggaggtcttttatct |
323 |
Q |
| |
|
| || || || ||||||||| |
|
|
| T |
22656924 |
ctattggcggccttttatct |
22656905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 21937454 - 21937897
Alignment:
| Q |
1 |
tacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaa |
100 |
Q |
| |
|
|||||| | |||||||||||||| |||| | ||||||||| |||| || |||| ||||| |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
21937454 |
tacgttatcgtgtttgatgatgtttggagtctacatttttgggatgatatcgaatttgctggaattgatagtaaaaatggaagtaggatatttataacaa |
21937553 |
T |
|
| Q |
101 |
caaggaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgct-gagttgcaacctttaactgaagaacaatctctggagttgtttaa |
199 |
Q |
| |
|
|||||| || ||||||| | |||||||| | |||||| | | |||| || ||||||||| ||||||| | ||||||||| |||||||||| || |
|
|
| T |
21937554 |
caaggataattgatgttgtggtgtcttgtaaaaaatcttctttcattgaagttcttgagttgcaatgtttaactcatgaacaatctttggagttgttcaa |
21937653 |
T |
|
| Q |
200 |
taagaaggcatttcaatttgacaa--atgt-tgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagca |
296 |
Q |
| |
|
|||||||||||| |||||||| | ||| ||||||||||||||||| | || ||||||| |||| ||||| ||||||||||| |||||||| |||||| |
|
|
| T |
21937654 |
taagaaggcattcaaatttgactatgatgggtgttgtccaaaagagctaaatggtatatctaatgaaattgtaaaaaaatgcaatggtttaccgctagca |
21937753 |
T |
|
| Q |
297 |
attgttgccatcggaggtcttttatctttaagagataaaaattcaatcgagtggaagaggttttgtgaaaatctactcctagagctaaacaaggattcca |
396 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||| |||||| | ||||||||||| ||| | ||||||||| ||||| |||| | || | |
|
|
| T |
21937754 |
attgttgccatcggtggccttttatctacaagagagaaaaatgtgtttgagtggaagagatttagagaaaatctaaatttagagttaaagagaaatacac |
21937853 |
T |
|
| Q |
397 |
atttaattgggattaaagagattttaagtttgagttatgatgat |
440 |
Q |
| |
|
|| |||||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
21937854 |
atctaattgggataaatgaaattttaagtttaagttatgatgat |
21937897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 36 - 337
Target Start/End: Original strand, 22179753 - 22180058
Alignment:
| Q |
36 |
tttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagaga |
135 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| || |||||||| | || ||||| | | |
|
|
| T |
22179753 |
tttttgggatgatgttgaatctgctgcaattgatagtaaaaatggaagtaagatattaataacaacaaggaacatggatgttgcggtgtcctgtaaaaaa |
22179852 |
T |
|
| Q |
136 |
tcttcgcttgtcaaagtgct-gagttgcaacctttaactgaagaacaatctctggagttgtttaataagaaggcatttcaatttgacaaat---gttgtt |
231 |
Q |
| |
|
||||| | | | ||||| ||||||||| |||||||| ||||| ||| |||||||||| |||||||||||||| |||||||||| | |||| |
|
|
| T |
22179853 |
tcttctttcattgaggtgcttgagttgcaaactttaactcctgaacagtctttggagttgttcaataagaaggcattcaaatttgacaatgacgggtgtt |
22179952 |
T |
|
| Q |
232 |
gtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttgccatcggaggtcttttatctttaagaga |
331 |
Q |
| |
|
|| ||||||| |||||| |||| || |||| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
22179953 |
ttcaaaaagaggtcattggtatagctaatgaaattgttaaaaaatgcaatggtttaccgctagcaattgttgccatcggtggacttttatctacaagaga |
22180052 |
T |
|
| Q |
332 |
taaaaa |
337 |
Q |
| |
|
||||| |
|
|
| T |
22180053 |
gaaaaa |
22180058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 323
Target Start/End: Original strand, 22053038 - 22053357
Alignment:
| Q |
5 |
ttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaag |
104 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||| |||| ||||||| ||||| |||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
22053038 |
ttgttgtatttgatgatgtttggaatgaacatttttggcatgatattgaatttgctgcaattgatagtaaaaatggaagcaggatatttataacaacaag |
22053137 |
T |
|
| Q |
105 |
gaatatagatgttgcactttcttgtaagagatcttcgct---tgtcaaagtgctgagttgcaacctttaactgaagaacaatctctggagttgtttaata |
201 |
Q |
| |
|
|| || |||||||| | |||||| | | ||| || | || || | ||| |||||| ||||||| | ||||||||| |||||||||| || | |
|
|
| T |
22053138 |
gataatggatgttgcggtgtcttgtgaaaaatcatctttcactgagaagct--tgatttgcaatgtttaactcatgaacaatctttggagttgttcaaca |
22053235 |
T |
|
| Q |
202 |
agaaggcatttcaatttgacaaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgt |
301 |
Q |
| |
|
|||||||||| |||||||| | | ||||| |||||||||||| ||| ||||||| |||| ||||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
22053236 |
agaaggcattcaaatttgaccatgggtgttgcccaaaagagctcgttggtatatctaatgaaattgttaaaaaatgcaatggtttaccgctagcaaatgt |
22053335 |
T |
|
| Q |
302 |
tgccatcggaggtcttttatct |
323 |
Q |
| |
|
||||||||| || ||||||||| |
|
|
| T |
22053336 |
tgccatcggtggacttttatct |
22053357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 22621072 - 22620753
Alignment:
| Q |
8 |
ttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaa |
107 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||| || || || ||| ||||||||||||||||| ||||||||||| || |||||||| | |
|
|
| T |
22621072 |
ttgtatttgatgatgtatggaccatagatttttggaatgaaatagagcatgttgtgattgataataaaaatgggagtaagatattgattacaacaagaag |
22620973 |
T |
|
| Q |
108 |
tatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaag |
206 |
Q |
| |
|
||| |||||||| ||| |||||| | |||||| || | | |||| ||| | |||||||||||||| ||||||||| | |||||||| ||||||||| |
|
|
| T |
22620972 |
tatggatgttgctatttattgtaaaaaatcttcttttattgaggtgcatgaactacaacctttaactgaggaacaatcttttgagttgttcaataagaag |
22620873 |
T |
|
| Q |
207 |
gcatttcaatttgaca---aatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttg |
303 |
Q |
| |
|
| ||||| ||||||| | | ||||||||||||| || ||||||||||||| || |||| || ||||||||| |||||||||||||||||||| | |
|
|
| T |
22620872 |
gtatttcgatttgactttgatggaagttgtccaaaagatctaattgatatatcttccgaaattgctagaaaatgcaagggtttaccactagcaattgtag |
22620773 |
T |
|
| Q |
304 |
ccatcggaggtcttttatct |
323 |
Q |
| |
|
|| | || |||||||||||| |
|
|
| T |
22620772 |
ccgttggtggtcttttatct |
22620753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 316
Target Start/End: Complemental strand, 22648312 - 22648030
Alignment:
| Q |
38 |
tttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagatc |
137 |
Q |
| |
|
||||| ||||||||||| ||| | ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| | | |||||||| ||| |
|
|
| T |
22648312 |
tttgggatgagattgaaaatgcattgattgataataaaaatgggagtaagatatttattacaacaagaaatatggatgttgccatatattgtaagaaatc |
22648213 |
T |
|
| Q |
138 |
ttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaaggcatttcaatttgacaa--atgt-tgttgt |
233 |
Q |
| |
|
||| | | ||||| ||| |||||||||||||| | ||||||||| | |||||||| || |||||| ||||||| |||||||| ||| |||||| |
|
|
| T |
22648212 |
ttctttcattgaagtgtatgaattgcaacctttaacaaatgaacaatcttttgagttgttcaacaagaagacatttcagtttgacaacaatggatgttgt |
22648113 |
T |
|
| Q |
234 |
ccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttgccatcggaggtct |
316 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||| || ||||||||| |||||||| || |||||||||||||| || ||||| |
|
|
| T |
22648112 |
ccaaaagaactcattgatatatcttttgaaatttctagaaaatgcaagggtttaccgctggcaattgttgccattggtggtct |
22648030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 338
Target Start/End: Original strand, 22187324 - 22187630
Alignment:
| Q |
36 |
tttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagaga |
135 |
Q |
| |
|
|||||||||||| ||| ||| || || ||||||| |||||||||||||| ||||||||||||||||||||| | |||||| | |||||||| ||| |
|
|
| T |
22187324 |
tttttggaatgatattaaatatgttgcaattgattgtaaaaatggaagtaggatatttataacaacaaggaaaaagaatgttgtggtgtcttgtaa-aga |
22187422 |
T |
|
| Q |
136 |
-tcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaaggcatttcaatttgaca---aatgttgt |
230 |
Q |
| |
|
||||| || | | |||| ||| ||||||||||| || |||||||||| |||||||||| |||||||||||||| || |||| | | ||| |
|
|
| T |
22187423 |
gtcttcttttattgaggtgcatgaactgcaacctttatctctagaacaatctttggagttgttcaataagaaggcattcaaaattgattgtgatgggtgt |
22187522 |
T |
|
| Q |
231 |
tgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttgccatcggaggtcttttatctttaagag |
330 |
Q |
| |
|
|||||||| |||||||||| |||| || |||| |||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
22187523 |
tgtccaaacgagctcattggtatagctgatgaaattgttaaaaaatgcagtggtttaccgctagcaattgttgccatcggtggccttttatctacaagag |
22187622 |
T |
|
| Q |
331 |
ataaaaat |
338 |
Q |
| |
|
| |||||| |
|
|
| T |
22187623 |
agaaaaat |
22187630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 440
Target Start/End: Original strand, 21945928 - 21946368
Alignment:
| Q |
4 |
gttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaa |
103 |
Q |
| |
|
||||| || ||||||||||| |||| | ||||||||| |||| || ||| ||||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
21945928 |
gttgtcgtctttgatgatgtttggactgtacatttttgggatgattttaaatttgctgcaattgatagtaaaaatggaagtaggatatttataacaacaa |
21946027 |
T |
|
| Q |
104 |
ggaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaag-tg-ctgagttgcaacctttaactgaagaacaatctctggagttgtttaata |
201 |
Q |
| |
|
|||| | |||||| ||||||||| | |||||| || | || || |||| ||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
21946028 |
ggaacaagaatgttgtgaattcttgtaaaaaatcttc-tttcactgagatgtttgagctgcaatgtttaactcaagaacaatctttggagttgtttaata |
21946126 |
T |
|
| Q |
202 |
agaaggcatttcaatttgacaaatgt---tgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaat |
298 |
Q |
| |
|
||||||||||| |||||||| | || |||| |||||| ||||| |||| |||| || |||| ||||| |||||||| || |||||||| ||||||| |
|
|
| T |
21946127 |
agaaggcatttaaatttgactatggtgggtgttatccaaatgagctaattggtatagctaatgaaattgtaaaaaaatggaatggtttaccgttagcaat |
21946226 |
T |
|
| Q |
299 |
tgttgccatcggaggtcttttatctttaagagataaaaattcaatcgagtggaagaggttttgtgaaaatctactcctagagctaaacaaggattccaat |
398 |
Q |
| |
|
|| ||| ||||| || ||||||||| ||||| ||||||| |||||| |||| ||| | ||||||||| |||||||||| | ||| | || |
|
|
| T |
21946227 |
tgctgctatcggtggccttttatctacgagagagaaaaatttgtctgagtggcagagatttagagaaaatctaaatttagagctaaagacagatacagat |
21946326 |
T |
|
| Q |
399 |
ttaattgggattaaagagattttaagtttgagttatgatgat |
440 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
21946327 |
ctaattgggataaaagaagttttaagtttaagttatgatgat |
21946368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 338
Target Start/End: Original strand, 22028336 - 22028642
Alignment:
| Q |
36 |
tttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagaga |
135 |
Q |
| |
|
|||||||||||| ||| ||| || || ||||||| |||||||||||||| ||||||||||||||||||||| | |||||| | |||||||| ||| |
|
|
| T |
22028336 |
tttttggaatgatattaaatatgttgcaattgattgtaaaaatggaagtaggatatttataacaacaaggaaaaagaatgttgtggtgtcttgtaa-aga |
22028434 |
T |
|
| Q |
136 |
-tcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaaggcatttcaatttgaca---aatgttgt |
230 |
Q |
| |
|
||||| || | | |||| ||| ||||||||||| || |||||||||| |||||||||| |||||||| |||| || |||| | | ||| |
|
|
| T |
22028435 |
gtcttcttttattgaggtgcatgaactgcaacctttatctctagaacaatctttggagttgttcaataagaattcattcaaaattgattgtgatgggtgt |
22028534 |
T |
|
| Q |
231 |
tgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttgccatcggaggtcttttatctttaagag |
330 |
Q |
| |
|
|||||||| |||||||||| |||| || |||| |||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
22028535 |
tgtccaaacgagctcattggtatagctgatgaaattgttaaaaaatgcagtggtttaccgctagcaattgttgccatcggtggccttttatctacaagag |
22028634 |
T |
|
| Q |
331 |
ataaaaat |
338 |
Q |
| |
|
| |||||| |
|
|
| T |
22028635 |
agaaaaat |
22028642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 4 - 338
Target Start/End: Complemental strand, 18967149 - 18966811
Alignment:
| Q |
4 |
gttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaa |
103 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||| |||| ||||||| || |||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
18967149 |
gttgttgtgtttgatgatgtttggagtttacatttttgggatgatattgaatttgttgtaattgataataaaaaaggaagtaacatattgataacaacaa |
18967050 |
T |
|
| Q |
104 |
ggaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataa |
202 |
Q |
| |
|
|||| | ||||||| | |||||||| || |||| | | || | |||||||||||||||||| |||||||||||| | |||||||| ||||| |
|
|
| T |
18967049 |
ggaacctggatgttgttgtctcttgtaaaaggtcttatttcactgaggtacttgagttgcaacctttaaccgaagaacaatctatagagttgttcaataa |
18966950 |
T |
|
| Q |
203 |
gaaggcatttcaatttgacaaatgt---tgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaatt |
299 |
Q |
| |
|
|||| | || ||||||| | || ||||||||||| || || |||| ||| || |||| ||||||||||||||| ||||||||||| || ||| |
|
|
| T |
18966949 |
gaagacgttcaaatttgaacatagtgggtgttgtccaaatgatctgattgtcataactaatgaaattgttaaaaaatgcctcggtttaccacttgctatt |
18966850 |
T |
|
| Q |
300 |
gttgccatcggaggtcttttatctttaagagataaaaat |
338 |
Q |
| |
|
||| |||| || || ||||| |||| | |||| |||||| |
|
|
| T |
18966849 |
gtttccatgggtggacttttgtcttcacgagagaaaaat |
18966811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 22105240 - 22105335
Alignment:
| Q |
228 |
tgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttgccatcggaggtcttttatct |
323 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||| ||||||||||||||||| |||||||| ||||||||||||||||| || || ||||||||| |
|
|
| T |
22105240 |
tgttgtccaaaagagctcattggtatagctaatgacattgttaaaaaatgcaatggtttaccgctagcaattgttgccataggtggccttttatct |
22105335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 324
Target Start/End: Complemental strand, 22436795 - 22436475
Alignment:
| Q |
5 |
ttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaag |
104 |
Q |
| |
|
|||| |||||||| |||||||||||| | || |||||||||| ||||||| |||| | |||||||| |||||| |||| |||| || |||||||| |
|
|
| T |
22436795 |
ttgtcgtgtttgacgatgtatggaacttaaatatttggaatgatattgaatttgctatgattgataacttaaatggttctaaggtattaatcacaacaag |
22436696 |
T |
|
| Q |
105 |
gaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataag |
203 |
Q |
| |
|
||| || |||||||| ||||| |||||||||||| |||| |||| | ||| | ||| ||||||||||||| ||||| | || ||||| |||||| |
|
|
| T |
22436695 |
gaaaatgaatgttgcaaattcttttaagagatcttcttttgttgaagtacatgaacttcaaggtttaactgaagaaaaatctttagaattgttcaataag |
22436596 |
T |
|
| Q |
204 |
aaggcatttca--atttgacaaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgt |
301 |
Q |
| |
|
|||||||| || | |||| | ||||||||| || | || ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
22436595 |
aaggcattccataacttgagtg--gatgttgtccacaaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattacctctagcaattgt |
22436498 |
T |
|
| Q |
302 |
tgccatcggaggtcttttatctt |
324 |
Q |
| |
|
| || || ||||||||||||| |
|
|
| T |
22436497 |
agtcactggtggtcttttatctt |
22436475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22368092 - 22367989
Alignment:
| Q |
1 |
tacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||| ||||||| | || | |||||||| |||||||| |||||||||| || |||| |
|
|
| T |
22368092 |
tacgttgtagtgtttgatgatgtatgggactcacatttttggaatgatattgaattttctatgattgataacaaaaatggttgtaagatattaatcacaa |
22367993 |
T |
|
| Q |
101 |
caag |
104 |
Q |
| |
|
|||| |
|
|
| T |
22367992 |
caag |
22367989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 22630599 - 22630401
Alignment:
| Q |
5 |
ttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaag |
104 |
Q |
| |
|
|||| |||||||||||||||||| | || |||||| |||| ||||||| |||| | |||||||| |||||||| |||||||||| || |||||||| |
|
|
| T |
22630599 |
ttgtagtgtttgatgatgtatgggaggcacaattttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaag |
22630500 |
T |
|
| Q |
105 |
gaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataag |
203 |
Q |
| |
|
|| | ||||||||| | ||||||||| ||||| ||| |||||||| |||| || ||| |||| |||||||||| ||| |||| |||||||| ||| |
|
|
| T |
22630499 |
aaacaaggatgttgcagatgcttgtaagaaatctt---ttggcaaagtgcatgagctggaacgtttatctgaagaacagtctttggaattgtttaaaaag |
22630403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 22357938 - 22357866
Alignment:
| Q |
229 |
gttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgt |
301 |
Q |
| |
|
|||||||| || | || ||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22357938 |
gttgtccagaaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattaccactagcaattgt |
22357866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 22458642 - 22458535
Alignment:
| Q |
13 |
tttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaatatag |
112 |
Q |
| |
|
|||||||||||||||| | | ||||||||| |||| || ||| |||| | |||||||||||||| || |||||||||| || |||||||| || || | |
|
|
| T |
22458642 |
tttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatgg |
22458543 |
T |
|
| Q |
113 |
atgttgca |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
22458542 |
atgttgca |
22458535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 22481623 - 22481516
Alignment:
| Q |
13 |
tttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaatatag |
112 |
Q |
| |
|
|||||||||||||||| | | ||||||||| |||| || ||| |||| | |||||||||||||| || |||||||||| || |||||||| || || | |
|
|
| T |
22481623 |
tttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatgg |
22481524 |
T |
|
| Q |
113 |
atgttgca |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
22481523 |
atgttgca |
22481516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 22105080 - 22105130
Alignment:
| Q |
57 |
tgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaa |
107 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
22105080 |
tgctgtatttgataataaaaaaggaagtaggatacttataacaacaaggaa |
22105130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 301
Target Start/End: Complemental strand, 22442739 - 22442609
Alignment:
| Q |
171 |
actgaagaacaatctctggagttgtttaataagaaggcatttcaatttgac---aaatgttgttgtccaaaagagctcattgatatatcttatgatattg |
267 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||||||||||| |||| || | ||||||||||| | || |||| |||||||| | |||| |
|
|
| T |
22442739 |
actgtagaacaatctttggagttgttcaataagaaggcatttca---tgacttaaacggacgttgtccaaaaaatcttattggtatatcttccaaaattg |
22442643 |
T |
|
| Q |
268 |
ttaaaaaatgcaaaggtttaccactagcaattgt |
301 |
Q |
| |
|
|| |||||||||| || ||||||||||||||||| |
|
|
| T |
22442642 |
ttgaaaaatgcaatggattaccactagcaattgt |
22442609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 22468104 - 22467908
Alignment:
| Q |
10 |
gtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaata |
109 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||| ||||||| |||| | |||||||| |||||||| |||||||||| || ||||| || || | |
|
|
| T |
22468104 |
gtgtttgatgatgtatgggattcacatttttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacgagaaaca |
22468005 |
T |
|
| Q |
110 |
tagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaaggc |
208 |
Q |
| |
|
| ||||||| | ||||||||| ||||| ||| ||||||| |||| || ||| |||| |||||||||| || |||| |||||||| |||||||| |
|
|
| T |
22468004 |
aggttgttgcagatgcttgtaagaaatctt---ttggtaaagtgcatgagctggaacgtttatctgaagaacagtccttggaattgtttaaaaagaaggc |
22467908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 22208354 - 22208458
Alignment:
| Q |
37 |
ttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagat |
136 |
Q |
| |
|
||||||||||| |||| || | || | ||||||| |||||| ||||||| | |||| || ||||| ||||| || |||||||| | ||||||||||| | |
|
|
| T |
22208354 |
ttttggaatgatattggattttctttgattgatagtaaaaaaggaagtagggtattaatcacaactaggaagattgatgttgccatgtcttgtaagaggt |
22208453 |
T |
|
| Q |
137 |
cttcg |
141 |
Q |
| |
|
||||| |
|
|
| T |
22208454 |
cttcg |
22208458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 22458425 - 22458353
Alignment:
| Q |
229 |
gttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgt |
301 |
Q |
| |
|
|||||||| || | || ||||||||||||| | | |||||| |||||||||| || || |||||||||||||| |
|
|
| T |
22458425 |
gttgtccagaaaatcttattgatatatcttttaaaattgttgaaaaatgcaatggattgccactagcaattgt |
22458353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 22481406 - 22481334
Alignment:
| Q |
229 |
gttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgt |
301 |
Q |
| |
|
|||||||| || | || ||||||||||||| | | |||||| |||||||||| || || |||||||||||||| |
|
|
| T |
22481406 |
gttgtccagaaaatcttattgatatatcttttaaaattgttgaaaaatgcaatggattgccactagcaattgt |
22481334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 34989525 - 34989844
Alignment:
| Q |
8 |
ttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaa |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| || ||| | ||||||||||||||| |||||||||||||| || ||||| || |
|
|
| T |
34989525 |
ttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagatatttattaccacaagaaa |
34989624 |
T |
|
| Q |
108 |
tatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaag |
206 |
Q |
| |
|
|| |||||||| | | |||||||| |||||| || | |||||| ||| | ||||| ||||||||||||||||| | || ||||| ||||||||| |
|
|
| T |
34989625 |
taaggatgttgccatgtattgtaagaaatcttcatttattgaagtgcatgaactacaaccattaactgaagaacaatcaattgatttgttcaataagaag |
34989724 |
T |
|
| Q |
207 |
gcatttcaatttgac---aaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttg |
303 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||| ||| ||| |||| || || ||||| || ||||||||||||||||| |
|
|
| T |
34989725 |
gcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctaggaagtgcaagggcttaccactagcaattgtga |
34989824 |
T |
|
| Q |
304 |
ccatcggaggtcttttatct |
323 |
Q |
| |
|
| || || |||||||||||| |
|
|
| T |
34989825 |
ctattggtggtcttttatct |
34989844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 2305643 - 2305324
Alignment:
| Q |
8 |
ttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaa |
107 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||||||||||| |||| | | |||| |||||||||| |||||||||||||| || ||||| || |
|
|
| T |
2305643 |
ttgtgtttgataatgtatggaacacaagtttttgggatgagattgaatatgctatgagtgatcataaaaatggtagtaagatatttattaccacaagaaa |
2305544 |
T |
|
| Q |
108 |
tatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaag |
206 |
Q |
| |
|
||| |||||||| | | |||||||| |||||| || | |||||| ||| | |||| ||||||||| ||| ||| | || ||||||||||||||| |
|
|
| T |
2305543 |
tatggatgttgccatatattgtaagaaatcttcttttattcaagtgcatgaactacaacttttaactgaggaaaaataatttgatttgtttaataagaag |
2305444 |
T |
|
| Q |
207 |
gcatttcaatttgac---aaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttg |
303 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||||||| ||| || | || || ||||| || ||||| ||||||||||| |
|
|
| T |
2305443 |
gcatttcaatttgactttgaaggatgttgtccaaaagagctcattgatatatcttttgaaatcgctaggaagtgcaagggcttacccctagcaattgtaa |
2305344 |
T |
|
| Q |
304 |
ccatcggaggtcttttatct |
323 |
Q |
| |
|
| || || |||||||||||| |
|
|
| T |
2305343 |
ctattggtggtcttttatct |
2305324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 34975690 - 34975772
Alignment:
| Q |
8 |
ttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagata |
90 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| || ||| | ||||||||||||||| ||||||||| |
|
|
| T |
34975690 |
ttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagata |
34975772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 34980470 - 34980551
Alignment:
| Q |
8 |
ttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagat |
89 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| || ||| | ||||||||||||||| |||||||| |
|
|
| T |
34980470 |
ttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat |
34980551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 73 - 303
Target Start/End: Complemental strand, 1686 - 1452
Alignment:
| Q |
73 |
aaaaatggaagtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagatcttcgcttgtcaaagtgc-tgagttgcaacctttaa |
171 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| ||||| |||||||| | | |||||||| |||||| || | |||||| ||| | |||||||||| |
|
|
| T |
1686 |
aaaaatggtagtaagatatttattaccacaagaaatatggatgttgctgtgtattgtaagaaatcttcttttattgaagtgcatgaactacaacctttaa |
1587 |
T |
|
| Q |
172 |
ctgaagaacaatctctggagttgtttaataagaaggcatttcaatttgac---aaatgttgttgtccaaaagagctcattgatatatcttatgatattgt |
268 |
Q |
| |
|
|||||||| |||| | || |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| ||| || | |
|
|
| T |
1586 |
ctgaagaaaaatcatttgatttgtttaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatatcttttgaaatcgc |
1487 |
T |
|
| Q |
269 |
taaaaaatgcaaaggtttaccactagcaattgttg |
303 |
Q |
| |
|
|| || ||||| || ||||| ||||||||||||| |
|
|
| T |
1486 |
taggaagtgcaagggcttacccctagcaattgttg |
1452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 1795 - 1714
Alignment:
| Q |
8 |
ttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagat |
89 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| || ||| | ||||||||||||||| |||||||| |
|
|
| T |
1795 |
ttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat |
1714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 872890 - 872796
Alignment:
| Q |
1 |
tacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttat |
95 |
Q |
| |
|
||||||||||||||| ||||| | |||| | | |||||| | |||| ||||||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
872890 |
tacgttgttgtgtttaatgatttttggagcgtacattttatggatgatattgaatttgttgtaattgataataaaaagggaagtaagatatttat |
872796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 1234167 - 1234073
Alignment:
| Q |
1 |
tacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttat |
95 |
Q |
| |
|
||||||||||||||| ||||| | |||| | | |||||| | |||| ||||||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1234167 |
tacgttgttgtgtttaatgatttttggagcgtacattttatggatgatattgaatttgttgtaattgataataaaaagggaagtaagatatttat |
1234073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 40580333 - 40580510
Alignment:
| Q |
45 |
tgagattgaatctgctgtaattgataataaaaatggaagtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagatcttcgctt |
144 |
Q |
| |
|
||||||||||| |||| | | ||||||||||||||| |||||||||||||| || |||| | ||| ||||||||| | | |||||||| || ||| || |
|
|
| T |
40580333 |
tgagattgaatatgctatgagtgataataaaaatggtagtaagatatttattacctcaagaagtatggatgttgcagtgtattgtaagaaattttctttt |
40580432 |
T |
|
| Q |
145 |
gtcaaagtgc-tgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaaggcatttcaatttgac |
221 |
Q |
| |
|
| |||||| ||| | ||||||||||| |||||| |||| | || ||||| || ||||||||||||||||||||| |
|
|
| T |
40580433 |
attgaagtgcatgaactacaacctttaacagaagaaaaatcatttgatttgttcaacaagaaggcatttcaatttgac |
40580510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 338
Target Start/End: Original strand, 27373034 - 27373143
Alignment:
| Q |
228 |
tgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttgccatcggaggtcttttatctttaa |
327 |
Q |
| |
|
||||||||||| |||||| |||||||| ||| | |||| | ||||||||||||| |||||||||| || ||||||| || | |||||||||||| ||| |
|
|
| T |
27373034 |
tgttgtccaaaggagctcgttgatatagcttccgctatt-tgaaaaaatgcaaagatttaccactaccatttgttgctattgatggtcttttatctataa |
27373132 |
T |
|
| Q |
328 |
gagataaaaat |
338 |
Q |
| |
|
||| |||||| |
|
|
| T |
27373133 |
aagagaaaaat |
27373143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 40580244 - 40580323
Alignment:
| Q |
16 |
gatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaagtaagatatttat |
95 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||| |||| | | ||||||||||||||| |||||||||||||| |
|
|
| T |
40580244 |
gatgatgtatggaacaaaagtttttggggtgatattgaatatgctatgagtgataataaaaatggtagtaagatatttat |
40580323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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