View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_high_8 (Length: 447)
Name: NF3620_high_8
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 4819380 - 4818954
Alignment:
| Q |
15 |
tataaaaaagttggattcctgagggaaaaatcttgacaataaatctttggtcagcaaaattttctaagttggctgccaaaactttcttagcttaaagaac |
114 |
Q |
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| T |
4819380 |
tataaaaaagttggattcctgagggaaaaatcttgacaataaatctttggtcagcaaaattttctaagttggctgccaatactttcttagcttaaagaac |
4819281 |
T |
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| Q |
115 |
ttcatcaatcaatgaaatgtaagcacctacacatgaatcagactaagttcttgaatgtaag--cattggtttcagagcagttcttgcttccaaaaagata |
212 |
Q |
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| T |
4819280 |
ttcatctatcaatgaaatgtaagcaccgacacatgaatcagactaagttcttgaatgcaagcacattggtttc--agcggttcttgcttccaaaaagata |
4819183 |
T |
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| Q |
213 |
tactgaacctggtttacatttgcgtgtataatggtttatttgaagtttctgaatattagaaaaaagttatcaagatcaacgattatcagaagagtcggtt |
312 |
Q |
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| T |
4819182 |
tactgaacctggtttacatttgcgtgtataatggtttatttgaagtttctgaatattagaaacaagttatcaagatcaacgattatcagaagagtcggtt |
4819083 |
T |
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| Q |
313 |
catgaacaatgtggt-------ccctggtcccatcaatgcctaacaaattttctaacaagaagatagttgctttaggatttgcattcaagaaaatatacc |
405 |
Q |
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| T |
4819082 |
cacgaacaatgtggtccctggaccctggtcccatcaatgcctaacaaattttctaacaagaagatagttgctttaggattttccttcaagaaaagatacc |
4818983 |
T |
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| Q |
406 |
agtgatacaagggcgctgctggctactga |
434 |
Q |
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| T |
4818982 |
agtgatacaagggcgctgctggctactga |
4818954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 4806268 - 4806155
Alignment:
| Q |
192 |
gttcttgcttccaaaaagatatactgaacctggtttacatttgcgtgtataatggtttatttgaagtttctgaatattagaaaaaagttatcaagatcaa |
291 |
Q |
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| T |
4806268 |
gttctttcttccgaaaagatatatt-aacctggttttcatttgtgtgtgtaatgatttaccagaagttgctgaatattggaaataagttatgaagatcaa |
4806170 |
T |
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| Q |
292 |
cgattatcagaagag |
306 |
Q |
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| T |
4806169 |
cgattattagaagag |
4806155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 4824218 - 4824140
Alignment:
| Q |
196 |
ttgcttccaaaaagatatactgaacctggtttacatttgcgtgtataatggtttatttgaagtttctgaatattagaaa |
274 |
Q |
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| T |
4824218 |
ttgcttccaaaaggatatattgaacctggtttacatttgtgagtgtcatgttttaccagaagtttctgaatattggaaa |
4824140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 4806890 - 4806803
Alignment:
| Q |
26 |
tggattcctgagggaaaaatcttgacaataaatctttggtcagcaaaattttctaagttggctgccaaaactttcttagcttaaagaa |
113 |
Q |
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|||| ||||||||||||||||||||||| ||||| ||||||| | || |||||||| | ||||| || ||||||| ||| |||||| |
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| T |
4806890 |
tggactcctgagggaaaaatcttgacaacaaatcgttggtcaatagaactttctaagatagctgctaatgctttcttggctcaaagaa |
4806803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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