View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3620_high_9 (Length: 412)

Name: NF3620_high_9
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3620_high_9
NF3620_high_9
[»] chr1 (8 HSPs)
chr1 (1-395)||(6592599-6592978)
chr1 (1-281)||(6601851-6602129)
chr1 (48-182)||(3372444-3372578)
chr1 (43-195)||(2006195-2006347)
chr1 (45-195)||(2011703-2011853)
chr1 (43-86)||(2010402-2010445)
chr1 (113-189)||(3218730-3218806)
chr1 (43-131)||(3361523-3361611)
[»] chr2 (4 HSPs)
chr2 (31-167)||(20934229-20934365)
chr2 (44-182)||(39273803-39273941)
chr2 (44-131)||(20952809-20952896)
chr2 (43-196)||(20923217-20923370)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 6592599 - 6592978
Alignment:
Q  1 ttgataactaaaaggtctttagaagtttcggagagacattcattatcaaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  6592599 ttgataactaaaaggtctttagaagtttcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagttggtagataaaa 6592698  T
Q  101 tacttgttctggctgcttccttaattggcaaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgtctgatac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592699 tacttgttctggctgcttccttaattggcaaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgtctgatac 6592798  T
Q  201 gcaaggagactgggattgttctcttctcttcatagatatagtcagacaaaaactccaatattcagaaaacaaattaggttactgtaaataaacaagctaa 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592799 gcaaggagactgggactgttctcttctcttcatagatatagtcagacaaaaactccaatattcagaaaacaaattaggttactgtaaataaacaagctaa 6592898  T
Q  301 tgtaacaattcattaaacaaaaacaacacaattaattattcctctgaatttaaattacaaaatgatatagttcgaaagtttatgtctattatata 395  Q
    |||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592899 tgtaacaat---------------aacacaattaattattcctctgaatttaaattacaaaatgatatagttcgaaagtttatgtctattatata 6592978  T

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Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 6601851 - 6602129
Alignment:
Q  1 ttgataactaaaaggtctttagaagtttcggagagacattcattatcaaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaa 100  Q
    ||||||||||||||||||| |||||| ||||||| |||||   ||||||||||||||| ||||||||||| ||||||||||||||| | ||| |||||||    
T  6601851 ttgataactaaaaggtcttcagaagtgtcggagatacattggctatcaaacacaagatttggaagtgtggcccatttgtacctccatttggttgataaaa 6601950  T
Q  101 tacttgttctggctgcttccttaattggcaaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgtctgatac 200  Q
    ||||||||||  |||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||| ||||||||||||| | || | |||    
T  6601951 tacttgttctcactgcttccttaattggcaaaattgagagaatttggtctattatatgacctggtaaactactaattctatcgggctccgcatccgttac 6602050  T
Q  201 gcaaggagactgggattgttctcttctcttcatagatatagtcagacaaaaactccaatattcagaaaacaaattaggtta 281  Q
    ||||||||||||||||||||| ||||||||  |||||||| ||||||||||  ||||| | |||||||||||| |||||||    
T  6602051 gcaaggagactgggattgttcccttctctt--tagatatattcagacaaaagatccaagaatcagaaaacaaaataggtta 6602129  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 3372578 - 3372444
Alignment:
Q  48 aaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaatatgg 147  Q
    ||||||||||| ||| ||||||  |||||||| |||||||  | | ||||||| |||||||||  ||||||| ||||||||||  |  |||||||| ||     
T  3372578 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctcactgcttctttaattggcatgagtgagagaatctga 3372479  T
Q  148 tctattacatggcctggtaaactactaactctatc 182  Q
    ||||||||||| |||||||| | ||||| ||||||    
T  3372478 tctattacatgacctggtaagcaactaattctatc 3372444  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 195
Target Start/End: Complemental strand, 2006347 - 2006195
Alignment:
Q  43 ttatcaaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaa 142  Q
    |||||||||||||||| ||| | ||||| ||||||||||||||| | | | ||||||| |||||||||  | |||||| ||||||||||    || ||||    
T  2006347 ttatcaaacacaagatttggtattgtggcccatttgtacctccatttgttggataaaacacttgttctcacagcttccctaattggcaagtgtgacagaa 2006248  T
Q  143 tatggtctattacatggcctggtaaactactaactctatcgggctcctcgtct 195  Q
    | | |||||||||||  ||| |||||  ||||| |||||| |||||| |||||    
T  2006247 tcttgtctattacatcacctagtaaataactaattctatccggctccccgtct 2006195  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 195
Target Start/End: Complemental strand, 2011853 - 2011703
Alignment:
Q  45 atcaaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaata 144  Q
    |||||||||||||| ||| | |||| |||||||||||||||| | | | |||||||||||||||||  |  | ||| ||||||||||    || | |||     
T  2011853 atcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaatacttgttctcacaacatccctaattggcaagcatgacaaaatc 2011754  T
Q  145 tggtctattacatggcctggtaaactactaactctatcgggctcctcgtct 195  Q
     ||||||||||||  |||||||||  ||||| |||||| ||||||||||||    
T  2011753 cggtctattacatcacctggtaaaacactaattctatccggctcctcgtct 2011703  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 2010445 - 2010402
Alignment:
Q  43 ttatcaaacacaagatgtggaagtgtggtccatttgtacctcca 86  Q
    |||||||||||||||| ||| | |||||||||||||||||||||    
T  2010445 ttatcaaacacaagatttggtattgtggtccatttgtacctcca 2010402  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 3218730 - 3218806
Alignment:
Q  113 ctgcttccttaattggcaaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcc 189  Q
    |||||||| ||||||||||    |||||||| || ||||||||||| |||||||| | ||||| |||||| ||||||    
T  3218730 ctgcttccctaattggcaagtatgagagaatctgatctattacatgacctggtaagcaactaattctatccggctcc 3218806  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 3361611 - 3361523
Alignment:
Q  43 ttatcaaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 131  Q
    |||||||| ||||||| ||| || |||  ||||||||  ||||| | | | |||||||||||||||||  |||||||||| ||||||||    
T  3361611 ttatcaaatacaagatttggtagcgtgtaccatttgttactccatttgctggataaaatacttgttctcactgcttccttgattggcaa 3361523  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 20934365 - 20934229
Alignment:
Q  31 gagagacattcattatcaaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggca 130  Q
    ||||||||||   ||||||||||||||| ||| ||||||  |||||||| |||||| |   ||||||||| |||||||||  |||||||| |||||||||    
T  20934365 gagagacattgtctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttctcactgcttccctaattggca 20934266  T
Q  131 aaatcgagagaatatggtctattacatggcctggtaa 167  Q
    |    |  ||||| |||||||||||||| ||||||||    
T  20934265 agtaagtcagaatctggtctattacatgacctggtaa 20934229  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 39273941 - 39273803
Alignment:
Q  44 tatcaaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaat 143  Q
    ||||||||||||||| ||| ||||||  ||||||||||||||| | | | || |||| |||||||||  |||||||| ||||||||||    || |||||    
T  39273941 tatcaaacacaagatttggtagtgtgtaccatttgtacctccattggctggacaaaacacttgttctcactgcttccctaattggcaagcaagacagaat 39273842  T
Q  144 atggtctattacatggcctggtaaactactaactctatc 182  Q
     || ||||||||||| || ||||| | ||||| ||||||    
T  39273841 ctgatctattacatgacccggtaagcaactaattctatc 39273803  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 20952896 - 20952809
Alignment:
Q  44 tatcaaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 131  Q
    ||||||||||||||| |||||||||| ||||||||| |||||| |   ||||||||| |||||||||  |||| ||| ||||| ||||    
T  20952896 tatcaaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttctcactgcatccctaatttgcaa 20952809  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 20923370 - 20923217
Alignment:
Q  43 ttatcaaacacaagatgtggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaa 142  Q
    ||||| ||||||||||  ||  |||||| |||||| | |||||| | | ||||||||| |||||||||  |||||||||| |||| |||    || ||||    
T  20923370 ttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattgacaagcgtgaaagaa 20923271  T
Q  143 tatggtctattacatggcctggtaaactactaactctatcgggctcctcgtctg 196  Q
     ||||||||||| |||  ||||||| | ||||| |||||||| ||||| |||||    
T  20923270 aatggtctattatatgatctggtaagcaactaattctatcggactccttgtctg 20923217  T

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