View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_low_11 (Length: 324)
Name: NF3620_low_11
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 11800683 - 11800377
Alignment:
| Q |
1 |
tgagtgattcaaaattctactcagagacaagtaaagtcttgctaaagatagtttaagtcataaattaaattacggtgttcttggtcgattcgaccttaaa |
100 |
Q |
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| T |
11800683 |
tgagtaattcaaaattctactcagagacaagtaaaatcttgctaaagatagtttaagtcataaattgaaccacggtgttcttggttgattcgaccttaaa |
11800584 |
T |
|
| Q |
101 |
aattacttatttgagttcaaccacataattttctaccatggtgttgataatatatcaacatataacacaactaatgaggaaaaaatatgaaacagaaaac |
200 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11800583 |
aattacttatttgagctcaaccacatatttttctaccatggtgttgataatacatcagcatataacacaactaatgaggaaaaaatatgaaacagaaaac |
11800484 |
T |
|
| Q |
201 |
atgtttgcaaattataactattattataaaaagttgaagtacaaaagaaaattagcagcagaaaatatgaaactagactctaatttttcacatctctagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11800483 |
atgtttgcaaattataactattattataaaaagttgaagtacaaaagaaaattagcagcagaaaatatgaaactagactctaatttttcacatctctagc |
11800384 |
T |
|
| Q |
301 |
acctaac |
307 |
Q |
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||||||| |
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| T |
11800383 |
acctaac |
11800377 |
T |
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