View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_low_12 (Length: 322)
Name: NF3620_low_12
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 32464635 - 32464862
Alignment:
| Q |
21 |
ctagcatttagttttttccagtatttatataggcgagatggagaagttaaatgggtttacggctgatttacattctttatcttgtatacctgtatttgtt |
120 |
Q |
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| T |
32464635 |
ctagcatttagttttttccagtatttatataggcgagatggaggagttaaatgggtttatggctgatttacattctttatcttgtataccggtatttgtt |
32464734 |
T |
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| Q |
121 |
ggtaacaatctcgattactttgactcggagaagaagatgcaaattctaagtattctcatgacattatgtcaagtcgtcatagtggaaatggacttacttc |
220 |
Q |
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| T |
32464735 |
ggcagcaatctcggttactttgactcggagaagaagatgcaaattctaagtattctcatgacattatgtcaagtcgtcgtagtggaaatggacttacttc |
32464834 |
T |
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| Q |
221 |
tattcttgttgacaacaatgagtggagg |
248 |
Q |
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| T |
32464835 |
tattcttgttgacaacaatgagtggagg |
32464862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 32465782 - 32465851
Alignment:
| Q |
241 |
agtggagggagtgtgtaatatgcatagtgttgttttttcttattttgttgctcatttcaaggcacatatt |
310 |
Q |
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| T |
32465782 |
agtggagggagtgtgtaatatgcatagtgttgttttttcttattttgttgctcatttcaaagcacatatt |
32465851 |
T |
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