View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_low_16 (Length: 287)
Name: NF3620_low_16
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 110362 - 110620
Alignment:
| Q |
17 |
acaaagtcttatcaattctttgcaactctattctactggtttttcttagttatacagttatttaagtagaatatttttcttgtttataacatgtggcgtg |
116 |
Q |
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| T |
110362 |
acaaagtcttatcaattctttgcaactctattctactggtttttcttagttatacagttatttaagtagaatatttttcttgtttataacatgtggcgtg |
110461 |
T |
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| Q |
117 |
attgttattctgtgcaagtataatacacatttataatggcatattatgtggtttttattttctctcttttcaagtgaatccgctattttaattatagata |
216 |
Q |
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| T |
110462 |
attgttattctgtgcaagtataatacacatttataatggcatattatgtggtttttattttctctcttttcaagtgaaaccgctattttaattatagata |
110561 |
T |
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| Q |
217 |
tgttggtaggtaagaattctgatgtaatcacacttttacataacaggattgtctgtgct |
275 |
Q |
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| T |
110562 |
tgttggtaggtaacaattctgatgtcatcacactttcacataacaggattgtgtgtgct |
110620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 20647507 - 20647258
Alignment:
| Q |
17 |
acaaagtcttatcaattctttgcaactctattctactggtttttcttagttatacagttatttaagtagaatatttttcttgtt------tataacatgt |
110 |
Q |
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| T |
20647507 |
acaaagtcttatcaattctttgaaactctattctactggtttttcttagttat--------ttaagtagaatatttttcttgttgatatttataacatgt |
20647416 |
T |
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| Q |
111 |
ggcgtgattgttattctgtgcaagtataatacacatttataatggcatattatgtggtttttattttctctcttttcaagtgaatccgctattttaatta |
210 |
Q |
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| T |
20647415 |
ggcgtgattgttattctgtgcaagtataatacacatttataatggcatattatgtggtttttattttctctcttttcaagtgaaaccgctattttaatta |
20647316 |
T |
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| Q |
211 |
tagatatgttggtaggtaagaattctgatgtaatcacacttttacataacaggattgt |
268 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |
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| T |
20647315 |
tagatatgttggtaggtaagaattctgatgtcattacacttttacataacatgattgt |
20647258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 63559 - 63661
Alignment:
| Q |
124 |
ttctgtgcaagtataatacacatttataatggcatattat-gtgg-tttttattttctctcttttcaagtgaatccgctattttaattatagatatgttg |
221 |
Q |
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|||||||||||||||||| | |||||||| ||||||||| || | |||||||||| | ||||||||||||| || |||||||| ||||| |||||||| |
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| T |
63559 |
ttctgtgcaagtataataagcctttataatagcatattatagtagatttttattttgttgcttttcaagtgaaaccactattttacttatatatatgttg |
63658 |
T |
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| Q |
222 |
gta |
224 |
Q |
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||| |
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| T |
63659 |
gta |
63661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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