View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_low_17 (Length: 287)
Name: NF3620_low_17
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 21416019 - 21416297
Alignment:
| Q |
16 |
aacacaactaaacaaatcacaatcttccctttcatc---------aaaaccaattctcaccatgaacgaaacctccaccccaacnnnnnnnntcagtttc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||| |
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| T |
21416019 |
aacacaactaaacaaatcacaatcttccctttcatctccatcatcaaaaccaattcacaccatgaacgaaacctccaccccaacaaaaaaaatcaatttc |
21416118 |
T |
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| Q |
107 |
gcagaagaatcactattaccaaaaacaaccaccaacatcaacagacacaaattcaaccgtagcatctcccacgttaacgacgaactccacactttccgat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21416119 |
gcagaagaatcactattaccaaaaacaaccaccaacatcaacagacacaaattcaaccgtagcatctcccacgtaaacgacgaactccacactttccgat |
21416218 |
T |
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| Q |
207 |
catatctccgatggatgtgtgtggatcaatcaaacgcaatccacgcaacactctcatggttcgttttcttcgtcttcgc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21416219 |
catatctccgatggatgtgtgtggatcaatcaaacgcaatccacgcaacactctcctggttcgttttcttcgtcttcgc |
21416297 |
T |
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